Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20334
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)                    46   2e-05
SB_17682| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_15461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         27   6.5  
SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)
          Length = 74

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +3

Query: 69  IVMSQANVSRAKAVRALKNNQSDIVNAIM 155
           +VM QANVSR KA+ ALK N++DIVNAIM
Sbjct: 13  LVMQQANVSRNKAIMALKKNENDIVNAIM 41


>SB_17682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 215 KSLSTLATGRKVE*HMHNRRYIELYTRNKKNYHK 316
           +S +    GR  + H H+R Y+ L + N K YHK
Sbjct: 430 QSSNAQKVGRYAQSHTHSRAYMRLLSANVKYYHK 463


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 163 QCRRSLRHNILCHCC*F*VTLNISNWTKS 249
           QC+  L+    CHCC   V +  S+WT S
Sbjct: 444 QCKLMLKRQ--CHCCLMAVYIRCSDWTSS 470


>SB_15461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 380 VCKCRLTLCFH*CMQLEANV 439
           +C C   LC H C +LE+N+
Sbjct: 412 MCTCTTALCSHGCYELESNI 431


>SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 332 DCTDTTYDNFFYFEYTVQYIAYYA 261
           DC  T Y  ++Y+ Y   Y  YYA
Sbjct: 4   DCPKTAYYYYYYYYYYYYYYYYYA 27


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 255 NTCIIGDILNCILEIKKIIISSVCTI 332
           N C+ G  L+CI+ +K I+ S   TI
Sbjct: 543 NICLKGSCLSCIVAMKTILASETVTI 568


>SB_44880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 426 WRPTFLQMELPSTWSPP 476
           W+PT LQ  +PS+ SPP
Sbjct: 323 WQPTLLQACVPSSLSPP 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,911,127
Number of Sequences: 59808
Number of extensions: 177188
Number of successful extensions: 388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)