Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20334
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   1.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   1.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   1.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.4  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 260 MHNRRYIELYTRNKKNYHK*CLYNLQILK 346
           +HN  Y   Y  N  NY+K   YN+  ++
Sbjct: 90  IHNNNY--KYNYNNNNYNKKLYYNINYIE 116


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 260 MHNRRYIELYTRNKKNYHK*CLYNLQILK 346
           +HN  Y   Y  N  NY+K   YN+  ++
Sbjct: 90  IHNNNY--KYNYNNNNYNKKLYYNINYIE 116


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 260 MHNRRYIELYTRNKKNYHK*CLYNLQILK 346
           +HN  Y   Y  N  NY+K   YN+  ++
Sbjct: 90  IHNNNY--KYNYNNNNYNKKLYYNINYIE 116


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 260 MHNRRYIELYTRNKKNYHK*CLYNLQILK 346
           +HN  Y   Y  N  NY+K   YN+  ++
Sbjct: 90  IHNNNY--KYNYNNNNYNKKLYYNINYIE 116


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 166 CRRSLRHNILCHCC*F 213
           CR       LCHCC F
Sbjct: 737 CRYEAHCFALCHCCDF 752


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 287 YTRNKKNYHK*CLYNLQILK 346
           Y  N  NY+K   YN+  ++
Sbjct: 97  YNNNYNNYNKKLYYNINYIE 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,039
Number of Sequences: 438
Number of extensions: 1776
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)