Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20334
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49470.1 68416.m05407 nascent polypeptide-associated complex ...    47   6e-06
At1g33040.1 68414.m04068 nascent polypeptide-associated complex ...    47   8e-06
At4g10480.1 68417.m01720 nascent polypeptide associated complex ...    46   1e-05
At3g12390.1 68416.m01544 nascent polypeptide associated complex ...    42   2e-04

>At3g49470.1 68416.m05407 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 217

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 22/32 (68%), Positives = 29/32 (90%)
 Frame = +3

Query: 69  IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 164
           +VM+QA VSR+KAV+ALK++  DIV+AIMELT
Sbjct: 185 LVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216


>At1g33040.1 68414.m04068 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 209

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +3

Query: 69  IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 164
           +VM+QA VS+AKAV ALK N  DIV+AIMELT
Sbjct: 177 LVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208


>At4g10480.1 68417.m01720 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 212

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 22/32 (68%), Positives = 27/32 (84%)
 Frame = +3

Query: 69  IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 164
           +VM+QA VSR KAV+ALK +  DIV+AIMELT
Sbjct: 180 LVMTQAGVSRPKAVKALKESNGDIVSAIMELT 211


>At3g12390.1 68416.m01544 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 203

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +3

Query: 69  IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 164
           +VM+QA VSR  AV+ALK    DIV+AIMELT
Sbjct: 171 LVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,560,445
Number of Sequences: 28952
Number of extensions: 119621
Number of successful extensions: 207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)