Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20333
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    26   4.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.7  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   6.2  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   6.2  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   6.2  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    25   8.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   8.2  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    25   8.2  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   8.2  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   8.2  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 122 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 238
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -3

Query: 369 FVYELDSLLGEDHSKLDGEVRFDDFLSILCP*LVGEVHVFLLPFSIRRFTASLITSPFFS 190
           F+ E+D LL   + K + E+    FLS +     GE ++ +  F ++R     + SP   
Sbjct: 16  FLAEIDELLTIPYEKNELEIGVSKFLSFINK--YGEPYL-ITEFQLQRCMEKFLNSPL-- 70

Query: 189 FRYSEHLAIAVSY 151
           ++  E+  +++ Y
Sbjct: 71  YQLDENAVLSIFY 83


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 358 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 450
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 27/96 (28%), Positives = 43/96 (44%)
 Frame = -3

Query: 579  DTGHPLRTFRVIELKVLFVLGWTCLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 400
            DT   L+ +R+     +  LG +  E  S + Q   KL           +   N  VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287

Query: 399  VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 292
             D + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -3

Query: 216 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 55
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 54  TKANKVSLI 28
            + N VSLI
Sbjct: 344 FQENVVSLI 352


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 212 KEAVKRLIENGKRNTWTSPTSY 277
           +E+++R+ +    N+W+SP SY
Sbjct: 318 RESLQRIYQKLTSNSWSSPVSY 339


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 499 YFKTCPPEDKQYLE-LDXTKGS*WMT 573
           YFK CP +  +Y + L   +GS WM+
Sbjct: 335 YFKNCPEKFLKYAQILSSKQGSDWMS 360


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 250 EHMDFAYQLWTKDGK 294
           EH DF Y  WT+ GK
Sbjct: 292 EHHDFPYVAWTRIGK 306


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 216 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 100
           SL+ S FFS  YSE   +   +  +   IYS S S  S+
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 472 TPVLENNRVYFKTCPPEDKQYLELD 546
           TP  ENN + ++ CP +  Q ++++
Sbjct: 159 TPAFENNPLSYRGCPDQRIQIVDIE 183


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 513 TCLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQLE 385
           TCL  N +  Q       DF  G +    EC +  V+ VD +E
Sbjct: 6   TCLRKNILELQPYRCARDDFSEGVLLDANECAYGSVISVDGVE 48


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = -3

Query: 252 FLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEA 73
           F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++   
Sbjct: 3   FFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAISTNG 59

Query: 72  SAHTARTKA 46
           +A  A T A
Sbjct: 60  AAKEAATAA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,636
Number of Sequences: 5004
Number of extensions: 52762
Number of successful extensions: 225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)