Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20333
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.68
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 2.1
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 29 2.7
05_03_0618 - 16262826-16263097,16263111-16263183 28 4.8
03_02_0950 + 12661008-12662312,12662403-12662576 28 4.8
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 28 4.8
08_01_0692 + 6121443-6122266,6122812-6124798 28 6.3
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 28 6.3
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 28 6.3
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 28 6.3
04_03_1035 - 21887562-21890030 27 8.4
04_03_0641 + 18261332-18262423 27 8.4
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 8.4
01_03_0122 + 12727007-12727202,12727351-12727508,12727601-127278... 27 8.4
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 334 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 438
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 402 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 316
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWT 262
T + + E L E K E ++RL ENGK WT
Sbjct: 410 TEVVRLIELLDEAKSRSKSELLQRLTENGKIVDWT 444
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 103 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 17
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 107 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 208
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +1
Query: 151 IRDRYRQML*ISEGKEGRGYQGSREASDRKRQ-EEHMDFAYQLWTKDGKEIVKSYFPIQF 327
I+D+YR+M+ G G ++G R RQ ++ + W + G+ V
Sbjct: 166 IKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTVPKMVGQGV 225
Query: 328 RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDK 444
+ + +RD +AL + + + + ++ KDK
Sbjct: 226 YGVGPVLAALMAERRDFYALYIQEGMDFS-VSNKKKKDK 263
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 405 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 292
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 27.9 bits (59), Expect = 6.3
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +1
Query: 211 QGSREASDRKRQEEHMDFAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALK 390
Q +E ++ + + D A TK GK+I K+ + F V++ + V+ +K
Sbjct: 752 QAEKETTNEQEDIQDPDIAN---TK-GKKISKNKRDV-FDVLYLDY-VEFGDKNVPIGFP 805
Query: 391 LIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLE-NNRVYFKTCPPEDK 528
I +N I DK ++ ++ P+ + N+ YFK PPE++
Sbjct: 806 RISHWKNNMITLYSDLDKVDEE-NFGLRPIKDFNDTTYFKVVPPENR 851
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -3
Query: 225 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 46
F +S+ + F+ +LA ++ MTT I+ C S LG L+ HT+R
Sbjct: 367 FFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQSIALGCFPRLKI-IHTSRKFM 424
Query: 45 NKVSLILAQWLSL 7
K+ + + W L
Sbjct: 425 AKIYIPVVNWFLL 437
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 168 AIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANK 40
A+ + S M T+ + C+AS +S + ALE A ++ NK
Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNK 507
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 131 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNT 256
MS V+G E A+A C EY + G + A+ R +G T
Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822
>04_03_0641 + 18261332-18262423
Length = 363
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -3
Query: 282 CP*LVGEVHVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSS 103
CP L + LP S+R+ SL+ P F + HLA +V+ + + SC S
Sbjct: 267 CPNL-NTRRIMTLPSSLRKL--SLLGCPSIEFIDNSHLASSVTLKGLNLKLVSC-PDLIS 322
Query: 102 VLGA 91
++GA
Sbjct: 323 IVGA 326
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 39 LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 167
LC P + +RW TP + +++ W+ C +++ T+ ++
Sbjct: 204 LCTPQPT-IIRWSTTPPVSADVLHQWKGFCALIANAYYTKGMA 245
>01_03_0122 +
12727007-12727202,12727351-12727508,12727601-12727871,
12727957-12728186
Length = 284
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 152 YETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTSPT 271
Y+ +A+ L E IK+A++ L +NG RN W T
Sbjct: 99 YDQVVARFPPILDE-----IKDAIQTLYDNGSRNFWVHGT 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,389
Number of Sequences: 37544
Number of extensions: 357878
Number of successful extensions: 1213
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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