Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20333
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_45465| Best HMM Match : HEAT (HMM E-Value=0.018)                    28   6.5  
SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)                 28   6.5  
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)                   27   8.6  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 333 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDM 512
           DLH  + Q  +Q G     + +  + QQ   + LQ+Q QQ+   ++  +  KQ S+ + +
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQ---QQLQQQQQQKQQQQLQKKQQKQSSMEEKL 614

Query: 513 ST 518
           S+
Sbjct: 615 SS 616


>SB_45465| Best HMM Match : HEAT (HMM E-Value=0.018)
          Length = 301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 86  TLAPRTDDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTW 259
           T  P+ D  + +QL +S ++ EY    +K S     +  + IKE ++ L+EN   N W
Sbjct: 127 TCLPQVDHEIMQQL-VSTIVKEY----SKNSRPHARQVDKYIKEILQDLVENLNSNLW 179


>SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)
          Length = 261

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 431 TPKTKPARKSPGSLPPCWKTTEFTSRHVHPRTNSTLSSXT 550
           +PKT P           WKT+  T R   P+T+   S  T
Sbjct: 41  SPKTSPKTSPKTGRKTSWKTSTKTGRKTSPKTSLNASRKT 80


>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
          Length = 618

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 479 TGVNFQE--TFLLVLSLESPNAILLWFCWSINLRA*WSLLFMSLTVCSVKITLNWMGK*D 306
           TGV F E   +   L L S +++ +++  ++ LRA ++LLF   T      +L + G  D
Sbjct: 517 TGVQFDEFAVYCKPLELASVDSMYIFYKGALGLRANYTLLFPDKTWSYYWTSLEYSGLLD 576

Query: 305 L 303
           L
Sbjct: 577 L 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,362,560
Number of Sequences: 59808
Number of extensions: 412605
Number of successful extensions: 1378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)