Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20333
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    33   0.15 
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.35 
Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical pr...    31   0.61 
DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated...    31   0.61 
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucos...    29   1.9  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    29   1.9  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    29   1.9  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    29   1.9  
Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   7.5  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -2

Query: 289  HPLSITGR-RSPCVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQ 113
            HP S   R  + C+P    D T     DN + +  Q FR+ G S +     +  +     
Sbjct: 770  HPCSQPARCDNLCIPANTPDLTTSS--DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTY 827

Query: 112  YVISSWCKCGVRSQRTHGEDEG 47
              ISSW +C  +     GEDEG
Sbjct: 828  KCISSWWRCDGQDDCGDGEDEG 849


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 125 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 238
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical
           protein C45B11.1a protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 216 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 37
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 36  S 34
           S
Sbjct: 136 S 136


>DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated
           kinase PAK-2 protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 216 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 37
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 36  S 34
           S
Sbjct: 136 S 136


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 434 PKTKPARKSPGSLPPCWKTTE--FTSRHVHPRTNSTL 538
           PKT+P    P ++P CW+     F      PR N+T+
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNTM 454


>U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform c protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 171 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 19
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 171 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 19
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 171 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 19
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 171 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 19
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical
           protein C15H7.4 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 83  ATLAPRTDDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGK---RN 253
           AT +P  +  L ++   +V  G  E  +A   +   EKK EV+     + +EN K   RN
Sbjct: 136 ATTSPTIESDLTDKPDTNVYTGSREGYVAPSEKGSNEKKKEVVPNGGDKSVENKKGSDRN 195

Query: 254 TWTSPT 271
              +P+
Sbjct: 196 VKKTPS 201


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 128 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 214
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 270 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 298


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 128 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 214
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 271 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 299


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 258 HVFLLPFSI-RRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSAS 112
           H+ L  +     FT+S+I+SP    R   H A  V Y P  +L   CS S
Sbjct: 774 HILLSDYECPEMFTSSVISSP----RRQLHSAPRVYYQPRPSLFSQCSVS 819


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 262 FAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 441
           FA Q W  D K  +K+   IQ+    TE+   + N       + + ++N N++    SK 
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303

Query: 442 KTSKKVS 462
           KT    S
Sbjct: 304 KTQHSTS 310


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -3

Query: 570 HPLRTFRVIELKVLFVLGWTCLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQ 391
           + LR F  +E+ +  + G        ++  HGGK+PG          T C++   L+ D+
Sbjct: 270 YALRVFEGLEMAITSIDGADRTNFIQLIEDHGGKVPG------TMSKTRCSY---LISDK 320

Query: 390 LEGVMVPFVYELDSL 346
           + GV      E  S+
Sbjct: 321 ITGVKYAKAVEWKSM 335


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 21  APR*D*LCLPSSSP-CV-RWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 167
           APR D +C+PS SP CV ++ L P   + + T   ++C  V++L  +RP+S
Sbjct: 259 APRCDSMCMPSCSPSCVQQYSLCPQQCRPMCT---NAC--VTNLQVSRPVS 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,038,630
Number of Sequences: 27780
Number of extensions: 299918
Number of successful extensions: 1136
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)