Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20333
(587 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein ... 26 0.24
AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein ... 26 0.24
AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific pro... 26 0.24
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 25 0.73
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 0.96
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.9
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 6.8
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 21 9.0
>DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein 3
protein.
Length = 130
Score = 26.2 bits (55), Expect = 0.24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 161 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 265
A+A + +K+ EVIK+ +K L+EN K W S
Sbjct: 71 ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104
>AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein
protein.
Length = 130
Score = 26.2 bits (55), Expect = 0.24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 161 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 265
A+A + +K+ EVIK+ +K L+EN K W S
Sbjct: 71 ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104
>AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific
protein 3c precursor protein.
Length = 130
Score = 26.2 bits (55), Expect = 0.24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 161 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 265
A+A + +K+ EVIK+ +K L+EN K W S
Sbjct: 71 ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 24.6 bits (51), Expect = 0.73
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 280 TKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 423
T + K+I K P + ++I V ++ DH L+D + IA
Sbjct: 124 TMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 0.96
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 370 RDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKTCPPEDKQY 534
++H ++ L + H++ + DSK T S+ EN +FK+ PP Y
Sbjct: 513 QEHDSVMLGEISPHHE--YYDSKSSTETPPSYNQLNYNENIERFFKSKPPVATMY 565
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 190 DQHCDMKFGSWTYDGNQV 207
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 247 EEHMDFAYQLWTKDGKEI 300
++H D + WT DG ++
Sbjct: 190 DQHCDMKFGSWTYDGNQV 207
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 354 QAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQE 455
Q H+Q+ V +PQQ + Q+Q QQ+
Sbjct: 422 QQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.0 bits (42), Expect = 9.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 176 SEYLKEKKGEVIKEAVKRLIENGKRNTWTSP 268
S+ + + KG IK+ + IE+G W SP
Sbjct: 43 SDGIGDLKG--IKDKLSHFIESGITAIWLSP 71
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,491
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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