Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20332
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   1.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.3  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   4.3  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 338 LKMSHIDVTSWRDPYGADAHAGHVRG--GRLVP 246
           +++S  D+  WRD      H+G VRG  G+ +P
Sbjct: 301 IRLSLDDMDRWRDRIYDAIHSGVVRGDNGQNIP 333


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 61  GYHTLFEELANDLCAITGYDRVSF 132
           GYH        ++C +   D+VSF
Sbjct: 491 GYHGFHNPFTCNMCGVECSDKVSF 514


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 205 DAGRNICLIPVSAHGTNRPPRTWPACASAP 294
           D G  IC  P   +GTN    T   C S P
Sbjct: 395 DGGGYICDCPSGTNGTNCEIDTINECDSNP 424


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 445 THTEVKSIWTVPT*MR-RSVYVLLEITAVTCLILNLHKD 558
           TH E+++I++VP  M+  S +V +  +   C+   ++ D
Sbjct: 230 THNEIQTIFSVPLLMKIASQFVGIFCSLYFCIFGYIYDD 268


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 445 THTEVKSIWTVPT*MR-RSVYVLLEITAVTCLILNLHKD 558
           TH E+++I++VP  M+  S +V +  +   C+   ++ D
Sbjct: 55  THNEIQTIFSVPLLMKIASQFVGIFCSLYFCIFGYIYDD 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,827
Number of Sequences: 336
Number of extensions: 3715
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)