Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20332
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...   114   1e-26
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    28   0.86 
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    28   1.1  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    27   2.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   4.6  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   6.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.0  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score =  114 bits (274), Expect = 1e-26
 Identities = 49/95 (51%), Positives = 64/95 (67%)
 Frame = +3

Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC 434
           PASA MAG  V  ++    G +DM  LK+   +H++K++  M+TYPSTFG+FE    +  
Sbjct: 670 PASAAMAGFTVIPVKCLNNGYLDMQDLKEKASKHADKLAAFMVTYPSTFGIFEPDVKEAL 729

Query: 435 ALVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
            ++H HGGQVY DGANMNA VGLC  GD G+DV H
Sbjct: 730 EVIHEHGGQVYFDGANMNAMVGLCKAGDIGADVCH 764



 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 46/85 (54%), Positives = 54/85 (63%)
 Frame = +1

Query: 1   PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
           P +   F +IHP+ P EQ +GY  + E+L   L  ITG+D   FQPNSGA GEY GL  I
Sbjct: 585 PITNPLFANIHPYVPEEQAKGYRHVIEDLQLMLTTITGFDAACFQPNSGAAGEYTGLSVI 644

Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
           + Y    G   RNICLIPVSAHGTN
Sbjct: 645 RAYQRSIGQGHRNICLIPVSAHGTN 669


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
 Frame = -2

Query: 326 HIDVTSWRDPYGADA---HAGHVRGGRLVPCALTGIKQMFRPASPRYSW*RFIVRNPAYS 156
           HI++T +R+P   DA    A  + G  L   A    +++       Y    F VR     
Sbjct: 283 HINLTDFREPEDDDAMGSSAIDITGYYLPKYA----EEVENTCVFLYKAMDFFVREYGSY 338

Query: 155 PWAPL-LGWKDTRSYPVIAQRSLASSSNSV*YP 60
           P+    L + D  ++P+I+  SL  SSNS+ YP
Sbjct: 339 PFNSFKLCFVDETNFPIISTPSLVISSNSILYP 371


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 344 HVLKMSHIDVTSWRDPYGA 288
           H++K +  + TSWRD YG+
Sbjct: 86  HIVKRARDEATSWRDNYGS 104


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 19  FTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQ 135
           FT   PF    +   Y++ +  +  D C I+  D  SFQ
Sbjct: 331 FTGYFPFKTSVKTDLYYSKYMSILTDTCGISSTDESSFQ 369


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 385 LTQVLSASLKKKRRIYVPWCT 447
           +T++LSA  KK+   Y+P CT
Sbjct: 757 VTEILSAGNKKEAAKYIPRCT 777


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 121  RVSFQPNSGAQGEYAGLRTIKRYHEYR 201
            R   + NSG +GEY G   + R+ E+R
Sbjct: 1159 RFCLRENSGGKGEYHGGDGVIRHFEFR 1185


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +1

Query: 136 PNSGAQGEYA--GLRTIKRYHEYRGDAGRNI----CLIPVSAHGTNRPPRTWPACASAPY 297
           P+SG     +   L +I   +    + G N+     L PV  + +N+PP TW   ++  +
Sbjct: 56  PSSGLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVR-NMSNKPPLTWSPSSANLF 114

Query: 298 GSRQLVTSI 324
           G+ + VTSI
Sbjct: 115 GTSK-VTSI 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,285
Number of Sequences: 5004
Number of extensions: 57920
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)