Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20332
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 120 6e-28
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 120 8e-28
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 32 0.29
06_03_0159 - 17358853-17360781 31 0.88
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 30 1.5
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252... 29 2.7
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 29 2.7
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 28 4.7
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 4.7
07_03_1280 + 25434933-25436153 28 6.2
05_01_0587 + 5273650-5273740,5273861-5273924,5274001-5274302,527... 28 6.2
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 27 8.2
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 27 8.2
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 27 8.2
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 120 bits (290), Expect = 6e-28
Identities = 50/85 (58%), Positives = 63/85 (74%)
Frame = +1
Query: 1 PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
P +Y F ++HPFAP EQ GYH +F++L + LC ITG+D S QPN+GA GEYAGL I
Sbjct: 584 PVTYPSFANMHPFAPTEQAAGYHEMFDDLGDLLCKITGFDSFSLQPNAGASGEYAGLMVI 643
Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
+ YH RGD R++C+IPVSAHGTN
Sbjct: 644 RAYHRARGDYHRDVCIIPVSAHGTN 668
Score = 111 bits (268), Expect = 3e-25
Identities = 49/95 (51%), Positives = 68/95 (71%)
Frame = +3
Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC 434
PASA M GM++ A+ G+I++ L+ E + + ++ LM+TYPST GV+EE +IC
Sbjct: 669 PASAAMCGMKIVAVGTDSKGNINIEELRKAAEANKDNLAALMVTYPSTHGVYEEGIDEIC 728
Query: 435 ALVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
++H +GGQVY+DGANMNAQVGL SPG G+DV H
Sbjct: 729 RIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCH 763
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 120 bits (289), Expect = 8e-28
Identities = 49/85 (57%), Positives = 64/85 (75%)
Frame = +1
Query: 1 PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
P +Y +F ++HPFAP +Q GYH +F++L + LC ITG+D S QPN+GA GEYAGL I
Sbjct: 582 PVTYPNFANMHPFAPTDQAAGYHEMFDDLGDLLCKITGFDSFSLQPNAGASGEYAGLMVI 641
Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
+ YH RGD R++C+IPVSAHGTN
Sbjct: 642 RAYHRARGDYHRDVCIIPVSAHGTN 666
Score = 111 bits (268), Expect = 3e-25
Identities = 49/95 (51%), Positives = 68/95 (71%)
Frame = +3
Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC 434
PASA M GM++ A+ G+I++ L+ E + + ++ LM+TYPST GV+EE +IC
Sbjct: 667 PASAAMCGMKIVAVGTDSKGNINIEELRKAAEANKDNLAALMVTYPSTHGVYEEGIDEIC 726
Query: 435 ALVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
++H +GGQVY+DGANMNAQVGL SPG G+DV H
Sbjct: 727 MIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCH 761
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 276 GMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTF 401
GM+V +T D + + L D+++E VSCL + P TF
Sbjct: 1453 GMKVICHELTQAVDPESSVLDDLIKEADRLVSCLAVMVPKTF 1494
>06_03_0159 - 17358853-17360781
Length = 642
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 495 PAHSCWHRPNRLDLRVRAPGHIYPPLFLQRRRKYLGKSTLGTKLSHCVLLPC 340
PA H N LR P H+ PP F + R++ G+ T LS +LL C
Sbjct: 125 PAAVTHHSFNSALLRFPLPPHLLPPFFSRSLRRFPGR-LAPTLLSFNLLLKC 175
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 132 PTQ*WGPRRICGVAHNKALPRVPRGRRTEHLLDPGERARHQPASAHMAGM 281
PTQ W P + G + + +LP G + D + QP+ A AG+
Sbjct: 56 PTQPWYPPSVLGSSSHPSLPSSSSGSPHQRASDNPQSLHGQPSPAEAAGI 105
>03_05_0357 -
23424234-23424567,23424796-23424923,23425024-23425205,
23425255-23425504
Length = 297
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 153 RRICGVAHNKALPRVPRGRRTEH-LLDPGERARHQPASAHMAGMRVCAIRVTPTG 314
R + A +P + G ++ +++PGE + S MA MRVC V +G
Sbjct: 240 RPVTWAAKVHPVPAIDVGEEVQYPIMEPGEEVVEEMGSKAMASMRVCLPPVIRSG 294
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 498 RPAHSCWHRPNRLDLRVRAPG 436
R HS W RP RL+L +RA G
Sbjct: 33 RLLHSLWWRPRRLELALRAQG 53
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 1 PCSYKHFTDIH-PFAPLEQCQGYH 69
PC+ H +H PFAPLEQ Q H
Sbjct: 176 PCAPHHHYMLHAPFAPLEQMQWRH 199
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 202 GDAGRNICLIPVSAHGTNRPPRTWPACASAPYGSRQLVTSI 324
GDAG + ++ V +R P A SA Y + Q++TSI
Sbjct: 427 GDAGPVLDMMSVMLENISRTPLVAIATTSAVYRTAQIITSI 467
>07_03_1280 + 25434933-25436153
Length = 406
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -3
Query: 280 MPAMCAEAGWCRARSPGSSKCSVLRPRGTRGSALLCATPHIRLGPHYWVGKTPDRILL*H 101
MP + A G R+P + + +V P L P L G +P R++L
Sbjct: 109 MPVVAASGGRVLYRAPDTGELTVANPLTGASRVLPAPPPGAALHAVAMYGSSPYRVVLIT 168
Query: 100 KDH*QVPRTVYD 65
D + TV+D
Sbjct: 169 GDLPDLSMTVFD 180
>05_01_0587 +
5273650-5273740,5273861-5273924,5274001-5274302,
5274399-5274570,5274654-5274717,5274809-5274847
Length = 243
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 155 PWAPLLGWKDTRSYPVIAQRSLASSSNS 72
P AP++GW RS+ +R+LASSS+S
Sbjct: 69 PAAPVVGWPPVRSF----RRNLASSSSS 92
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 333 LKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADICALVHAHG 455
++D+VE +S + + S +F EK + + +L+ AHG
Sbjct: 234 IQDLVEVVRSSLSMMAKQWSSAMNLFNEKFSALPSLIAAHG 274
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/74 (22%), Positives = 29/74 (39%)
Frame = +1
Query: 106 ITGYDRVSFQPNSGAQGEYAGLRTIKRYHEYRGDAGRNICLIPVSAHGTNRPPRTWPACA 285
+ D + N A LR ++ + A R CL+P+ R P WP
Sbjct: 159 VVAADYIPCLDNVKAVKALKSLRHMEHRERHCPTAPRPRCLVPLPTG--YRSPLPWPRSR 216
Query: 286 SAPYGSRQLVTSIW 327
Y ++ L+ ++W
Sbjct: 217 DMEYLTKSLLCAVW 230
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 194 SW*RFIVRNPAYSPW 150
+W RF+ RN AY PW
Sbjct: 210 TWARFVERNVAYQPW 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,201,698
Number of Sequences: 37544
Number of extensions: 435431
Number of successful extensions: 1344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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