Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20332
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7) 120 9e-28
SB_27105| Best HMM Match : GDC-P (HMM E-Value=0) 105 3e-23
SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_43402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2) 29 2.7
SB_6596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_20408| Best HMM Match : rve (HMM E-Value=0.0034) 29 3.6
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097) 29 3.6
SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05) 28 4.8
SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 4.8
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7)
Length = 384
Score = 120 bits (289), Expect = 9e-28
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = +1
Query: 1 PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
P ++ F DIHP+AP++Q +GY L++E D C ITG+D V FQPNSGAQGEY GLR I
Sbjct: 127 PITWPRFADIHPYAPIQQAKGYLQLYDEFEKDFCEITGFDAVCFQPNSGAQGEYTGLRVI 186
Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
K Y E G R +CLIPVSAHGTN
Sbjct: 187 KAYLENNGQGHRKVCLIPVSAHGTN 211
Score = 104 bits (249), Expect(2) = 1e-27
Identities = 43/65 (66%), Positives = 54/65 (83%)
Frame = +3
Query: 345 VEEHSEKVSCLMLTYPSTFGVFEEKAADICALVHAHGGQVYLDGANMNAQVGLCSPGDYG 524
VE+ S++++C+M+TYPST G+FE DIC +VH HGGQVYLDGAN+NAQVGLC P DYG
Sbjct: 279 VEKFSDELACIMVTYPSTNGIFEAGIRDICDIVHYHGGQVYLDGANLNAQVGLCRPADYG 338
Query: 525 SDVSH 539
+DV H
Sbjct: 339 ADVMH 343
Score = 36.3 bits (80), Expect(2) = 1e-27
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +3
Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMV 347
PASA MAG V I+V +GDIDM LK V
Sbjct: 212 PASAQMAGFNVQVIKVGKSGDIDMEDLKKQV 242
>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
Length = 767
Score = 105 bits (251), Expect = 3e-23
Identities = 50/94 (53%), Positives = 63/94 (67%)
Frame = +3
Query: 258 ASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADICA 437
A G+RV + G H K VE+ S++++C+M+TYPST G+FE DIC
Sbjct: 431 AQGEYTGLRVIKAYLENNGQ---GHRK--VEKFSDELACIMVTYPSTNGIFEAGIRDICD 485
Query: 438 LVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
+VH HGGQVYLDGAN+NAQVGLC P DYG+DV H
Sbjct: 486 IVHYHGGQVYLDGANLNAQVGLCRPADYGADVMH 519
Score = 95.9 bits (228), Expect = 2e-20
Identities = 40/74 (54%), Positives = 50/74 (67%)
Frame = +1
Query: 1 PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
P ++ F DIHP+AP++Q +GY L++E D C ITG+D V FQPNSGAQGEY GLR I
Sbjct: 382 PITWPRFADIHPYAPIQQAKGYLQLYDEFEKDFCEITGFDAVCFQPNSGAQGEYTGLRVI 441
Query: 181 KRYHEYRGDAGRNI 222
K Y E G R +
Sbjct: 442 KAYLENNGQGHRKV 455
>SB_46750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Frame = +3
Query: 282 RVCAIRVTPTGDIDMAHLKDMVEEHSE------KVSCLMLTYPSTFGVFE--EKAADICA 437
R +R P G +D+ +K + + S+ KV CL ++ +T G E +
Sbjct: 21 RTQQVRTNPDGTLDLDEIKSKIHDGSDSHYTHTKVICLESSHNATGGTVLSLEYMKKVRE 80
Query: 438 LVHAHGGQVYLDGANM-NAQVGLCSP 512
L AHG QV+LDGA + NA L P
Sbjct: 81 LADAHGVQVHLDGARVFNAAASLGVP 106
>SB_43402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 315 DIDMAHLKDMVEEHSEKVSCLML 383
D DM +KDM+EEH + S L L
Sbjct: 199 DEDMVKVKDMIEEHQRQYSALSL 221
>SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2)
Length = 707
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 149 APLLGWKDTRSYPVIAQRSLASS 81
APL GW +TR Y AQ ++AS+
Sbjct: 2 APLCGWGETRVYTAKAQETVAST 24
>SB_6596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 149 APLLGWKDTRSYPVIAQRSLASS 81
APL GW +TR Y AQ ++AS+
Sbjct: 18 APLCGWGETRVYTAKAQETVAST 40
>SB_20408| Best HMM Match : rve (HMM E-Value=0.0034)
Length = 887
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 214 RNICLIPVSAHGTNRPPRTWPACASAPYGSRQLVTSIWLILRTW*KNTVRKFRA*C*LTQ 393
R+I V H + + PR W + S Y +QL ++W LR T R+
Sbjct: 100 RDIFKETVVTHKSAKEPRRWLSEPSYGYWPQQLNFAVWGFLRFHVYFTTRRILYELGAPC 159
Query: 394 VLSA-SLKKKRRIYVPWCTHTEVK 462
+ +A S KK R + TH +VK
Sbjct: 160 LATARSRKKSREMVGKALTHDDVK 183
>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1336
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 276 GMRVCAIRVTPTGDIDMAHLKDMVEEHSEKV 368
G+ C I + G+ DM LKD+VE+H +++
Sbjct: 1265 GIECCGIMID--GESDMEVLKDVVEQHKQEI 1293
>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 276 GMRVCAIRVTPTGDIDMAHLKDMVEEHSEKV 368
G+ C I + G+ DM LKD+VE+H +++
Sbjct: 82 GIECCGIMID--GESDMEVLKDVVEQHKQEI 110
>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
Length = 1366
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 276 GMRVCAIRVTPTGDIDMAHLKDMVEEHSEKV 368
G+ C I + G+ DM LKD+VE+H +++
Sbjct: 1146 GIECCGIMID--GESDMEVLKDVVEQHKQEI 1174
>SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05)
Length = 85
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 16 HFTDIHPFAPLEQCQGYHTLFEELANDL 99
H+TD A QC G+H F + +D+
Sbjct: 36 HYTDPADCAKFYQCDGFHRTFHRMCSDV 63
>SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 300
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 369 KLSHCVLLPCP*DEPYRCHQLA*PVW 292
+L C+LLPCP D P ++L W
Sbjct: 250 RLRECILLPCPVDCPASVYRLMKECW 275
>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 211 LRPRGTRGSALLCATPH 161
+RP GTR LLCA PH
Sbjct: 286 IRPFGTRHGDLLCALPH 302
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,900,108
Number of Sequences: 59808
Number of extensions: 488060
Number of successful extensions: 1373
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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