Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20332
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical p...   123   8e-29
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...   123   8e-29
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   5.5  
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical
           protein R12C12.1b protein.
          Length = 444

 Score =  123 bits (297), Expect = 8e-29
 Identities = 56/95 (58%), Positives = 68/95 (71%)
 Frame = +3

Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC 434
           PASA MA M+V  +     G+I+   L    E++S +++ +M+TYPST GVFE    D+C
Sbjct: 97  PASAQMANMKVVVVDSDHHGNINYKDLAAKAEKYSNQLAAIMVTYPSTHGVFESSIRDVC 156

Query: 435 ALVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
             VH HGGQVYLDGANMNAQVGLC PGDYGSDVSH
Sbjct: 157 DKVHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSH 191



 Score =  111 bits (266), Expect = 5e-25
 Identities = 49/85 (57%), Positives = 60/85 (70%)
 Frame = +1

Query: 1   PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
           P ++   + IHPFAP+EQ +GY  +F +L   LC ITGYD  S QPNSGA GEYAGL  I
Sbjct: 12  PITWPTLSSIHPFAPVEQAKGYSRIFGDLEKWLCEITGYDNFSLQPNSGANGEYAGLLAI 71

Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
           + Y  ++G+  RNICLIP SAHGTN
Sbjct: 72  RNYLIHKGEEQRNICLIPTSAHGTN 96


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score =  123 bits (297), Expect = 8e-29
 Identities = 56/95 (58%), Positives = 68/95 (71%)
 Frame = +3

Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC 434
           PASA MA M+V  +     G+I+   L    E++S +++ +M+TYPST GVFE    D+C
Sbjct: 632 PASAQMANMKVVVVDSDHHGNINYKDLAAKAEKYSNQLAAIMVTYPSTHGVFESSIRDVC 691

Query: 435 ALVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
             VH HGGQVYLDGANMNAQVGLC PGDYGSDVSH
Sbjct: 692 DKVHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSH 726



 Score =  111 bits (266), Expect = 5e-25
 Identities = 49/85 (57%), Positives = 60/85 (70%)
 Frame = +1

Query: 1   PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
           P ++   + IHPFAP+EQ +GY  +F +L   LC ITGYD  S QPNSGA GEYAGL  I
Sbjct: 547 PITWPTLSSIHPFAPVEQAKGYSRIFGDLEKWLCEITGYDNFSLQPNSGANGEYAGLLAI 606

Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
           + Y  ++G+  RNICLIP SAHGTN
Sbjct: 607 RNYLIHKGEEQRNICLIPTSAHGTN 631


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 286 TRMPAMCAEAGWCRARSPGSSKCSVLRPRGT 194
           T  P++CA+ G C AR     +  V RP+GT
Sbjct: 677 TDTPSVCAQCGLCSARGVACGR--VPRPKGT 705


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 217 NICLIPVSAHGTNRPPRTWPACASAPY 297
           N+C   V+   T RP RTWP   + PY
Sbjct: 129 NMC---VAIQTTYRPTRTWPTTTTTPY 152


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 286 TRMPAMCAEAGWCRARSPGSSKCSVLRPRGT 194
           T  P++CA+ G C AR     +  V RP+GT
Sbjct: 677 TDTPSVCAQCGLCSARGVACGR--VPRPKGT 705


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  FTDIHPFAPLEQCQGYHTLFEELANDL 99
           FT I   A L++ Q YHT++    N+L
Sbjct: 152 FTKIEHQAELDRYQSYHTIYRNFINNL 178


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 307 GVTRMAQTRMPAMCAEAGWCRARSPGSSKCSVL---RPRGTRGSALL 176
           G+TR++ TR+  MC     CR RS     C  L   +P G   S L+
Sbjct: 111 GITRLSDTRIQTMC-----CRLRSRDEFNCKDLIFNKPIGLTRSTLI 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,953
Number of Sequences: 27780
Number of extensions: 345821
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)