Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20332
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...   125   2e-29
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...   119   1e-27
At1g30130.2 68414.m03683 expressed protein similar to hypothetic...    33   0.18 
At1g30130.1 68414.m03682 expressed protein similar to hypothetic...    33   0.18 
At2g06775.1 68415.m00756 hypothetical protein                          28   3.9  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    27   6.8  
At5g51200.1 68418.m06349 expressed protein                             27   6.8  
At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family...    27   9.0  
At3g16500.1 68416.m02106 auxin-responsive AUX/IAA family protein...    27   9.0  
At3g13450.1 68416.m01692 2-oxoisovalerate dehydrogenase / 3-meth...    27   9.0  
At1g55510.1 68414.m06350 2-oxoisovalerate dehydrogenase, putativ...    27   9.0  

>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score =  125 bits (302), Expect = 2e-29
 Identities = 54/85 (63%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
           P ++  FTDIHPFAP+EQ QGY  +FE L + LC ITG+D  S QPN+GA GEYAGL  I
Sbjct: 590 PVTWPSFTDIHPFAPVEQAQGYQEMFENLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVI 649

Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
           + YH  RGD  RN+C+IPVSAHGTN
Sbjct: 650 RAYHMSRGDHHRNVCIIPVSAHGTN 674



 Score =  108 bits (260), Expect = 2e-24
 Identities = 47/95 (49%), Positives = 67/95 (70%)
 Frame = +3

Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC 434
           PASA M GM++  +     G+I++  ++   E + + ++ LM+TYPST GV+EE   +IC
Sbjct: 675 PASAAMCGMKIITVGTDAKGNINIEEVRKAAEANKDNLAALMVTYPSTHGVYEEGIDEIC 734

Query: 435 ALVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
            ++H +GGQVY+DGANMNAQVGL SPG  G+DV H
Sbjct: 735 NIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCH 769


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score =  119 bits (287), Expect = 1e-27
 Identities = 51/85 (60%), Positives = 62/85 (72%)
 Frame = +1

Query: 1   PCSYKHFTDIHPFAPLEQCQGYHTLFEELANDLCAITGYDRVSFQPNSGAQGEYAGLRTI 180
           P ++  FT++HPFAP+EQ QGY  +F  L   LC ITG+D  S QPN+GA GEYAGL  I
Sbjct: 596 PVTWPSFTNMHPFAPVEQAQGYQEMFTNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVI 655

Query: 181 KRYHEYRGDAGRNICLIPVSAHGTN 255
           + YH  RGD  RN+C+IPVSAHGTN
Sbjct: 656 RAYHMSRGDHHRNVCIIPVSAHGTN 680



 Score =  112 bits (269), Expect = 2e-25
 Identities = 49/95 (51%), Positives = 69/95 (72%)
 Frame = +3

Query: 255 PASAHMAGMRVCAIRVTPTGDIDMAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC 434
           PASA M GM++ A+     G+I++  L++  E + + ++ LM+TYPST GV+EE   +IC
Sbjct: 681 PASAAMCGMKIVAVGTDAKGNINIEELRNAAEANKDNLAALMVTYPSTHGVYEEGIDEIC 740

Query: 435 ALVHAHGGQVYLDGANMNAQVGLCSPGDYGSDVSH 539
            ++H +GGQVY+DGANMNAQVGL SPG  G+DV H
Sbjct: 741 NIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCH 775


>At1g30130.2 68414.m03683 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 162 IFALGPTIGLERHPI--VSCYSTKIISKFLEQCMISLTLLQWSERM 31
           +  + P++G E++P+    CY  +  SK L +C+  +T   W ER+
Sbjct: 102 LLTIPPSVGYEQNPLSLYYCYDLEGSSKRLSKCIAQVTNTPWGERV 147


>At1g30130.1 68414.m03682 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 162 IFALGPTIGLERHPI--VSCYSTKIISKFLEQCMISLTLLQWSERM 31
           +  + P++G E++P+    CY  +  SK L +C+  +T   W ER+
Sbjct: 102 LLTIPPSVGYEQNPLSLYYCYDLEGSSKRLSKCIAQVTNTPWGERV 147


>At2g06775.1 68415.m00756 hypothetical protein
          Length = 128

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 324 MAHLKDMVEEHSEKVSCLMLTYPSTFGVFEEKAADIC-ALVHAHGGQVYLDGANMNAQ 494
           + HL+D V+ H E V  +          FEEK  D+   L +  G  V ++ A +N Q
Sbjct: 28  IGHLQDFVDGHQEDVKRIGSKMSEMKAKFEEKFDDLTNRLENMEGALVEINNALLNHQ 85


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 558 VFMKVEDETRHCRNLQENINRPAHSC 481
           VF+K+ +E   C   +E+I  P++SC
Sbjct: 127 VFLKIREEKVPCELCKESIEGPSYSC 152


>At5g51200.1 68418.m06349 expressed protein
          Length = 1808

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 516 LQENINRPAHSCWHRPNRLDLRVRAPGHIYPPLF 415
           L +NINRPA S  H   + DL     G +  P F
Sbjct: 870 LVDNINRPAPSITHLLLKFDLDAPVEGTVLQPKF 903


>At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 475

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 194 SW*RFIVRNPAYSPW 150
           SW RF+ R+ AY PW
Sbjct: 207 SWGRFVERSTAYQPW 221


>At3g16500.1 68416.m02106 auxin-responsive AUX/IAA family protein
           similar to SP|O24408|AXII_ARATH Auxin-responsive protein
           IAA18 (Indoleacetic acid-induced protein 18)
           {Arabidopsis thaliana}; contains Pfam profile: PF02309:
           AUX/IAA family
          Length = 269

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -1

Query: 570 EIQNVFMKVEDETRHCRNLQENINRPAHSCWHRPNRLDLRVRAPGHI--YPPL-FLQRRR 400
           EI+N+  + ED++ HC N   N   P++     P+ +  +  APG +  +PP+   ++  
Sbjct: 61  EIRNIKKETEDKSFHCFN--GNHFSPSNKTTSVPH-ISQKRTAPGPVVGWPPVRSFRKNL 117

Query: 399 KYLGKSTLGTKLSH 358
                S LG + SH
Sbjct: 118 ASTSSSKLGNESSH 131


>At3g13450.1 68416.m01692 2-oxoisovalerate dehydrogenase /
           3-methyl-2-oxobutanoate dehydrogenase / branched-chain
           alpha-keto acid dehydrogenase E1 beta subunit (DIN4)
           identical to branched chain alpha-keto acid
           dehydrogenase E1 beta subunit [Arabidopsis thaliana]
           GI:7021286
          Length = 358

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 305 RDPYGADAHAGHV--RGGRLVPCALTGIKQMFRPASPR 198
           R PYGA  H GH   +      C + GIK +  P SPR
Sbjct: 150 RAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVI-PRSPR 186


>At1g55510.1 68414.m06350 2-oxoisovalerate dehydrogenase, putative /
           3-methyl-2-oxobutanoate dehydrogenase, putative /
           branched-chain alpha-keto acid dehydrogenase E1 beta
           subunit, putative strong similarity to branched chain
           alpha-keto acid dehydrogenase E1 beta subunit
           [Arabidopsis thaliana] GI:7021286; contains Pfam
           profiles PF02779: Transketolase, pyridine binding
           domain, PF02780: Transketolase, C-terminal domain
          Length = 352

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 305 RDPYGADAHAGHV--RGGRLVPCALTGIKQMFRPASPR 198
           R PYGA  H GH   +      C + GIK +  P SPR
Sbjct: 144 RAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVI-PRSPR 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,374
Number of Sequences: 28952
Number of extensions: 320515
Number of successful extensions: 873
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)