Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20329
         (410 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   2.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   2.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   3.6  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   4.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   4.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   4.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      20   8.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   8.2  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    20   8.2  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    20   8.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   8.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   8.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 56  RQPSNRIGVGSLDGLMAFCTS----KLEVCYIEANGFYLGKLP 172
           R+P NRI   +  G +  C++      ++ ++ ++G  +G +P
Sbjct: 27  REPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDVP 69


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 293 VQAARTLPSPAVRCIPPPRLRT 358
           +Q  R +P P V  IPP    T
Sbjct: 200 MQVKRNVPKPTVPKIPPAEFPT 221


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 293 VQAARTLPSPAVRCIPPPRLRT 358
           +Q  R +P P V  IPP    T
Sbjct: 200 MQVKRNVPKPTVPKIPPAEFPT 221


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 315 HHQLYDASLPPACEQXFGGIS 377
           HHQ +    PP C   F  ++
Sbjct: 351 HHQNFGPRHPPDCSMEFANMA 371


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 288 HRCKPPEHSHHQ 323
           HR +PP H H +
Sbjct: 254 HRDRPPRHFHEE 265


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 295 ASRPNTPITSCTMHPSPPP 351
           +  P++P +  +  PSPPP
Sbjct: 215 SEHPDSPNSKKSATPSPPP 233


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 285 VHRCKPPEHSHHQ 323
           VHR KPP    HQ
Sbjct: 184 VHRAKPPMRVLHQ 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 300 PPEHSHHQ 323
           PP H HHQ
Sbjct: 737 PPPHPHHQ 744


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 300 PPEHSHHQ 323
           PP H HHQ
Sbjct: 629 PPPHPHHQ 636


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 298 LHLWTAAGQTVRVTDS 251
           LH+  A+G+T+ VT S
Sbjct: 166 LHITLASGRTLTVTPS 181


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 25  PDHRKGCVRFPSTKQQNRCWLIGRPHGLLH 114
           P   +G + FP+  Q N+ +   R H   H
Sbjct: 275 PFASRGSMHFPNQYQMNQEYRTDRKHTQQH 304


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 302 RLAPVDSCGPDGT 264
           +LA +  CG DGT
Sbjct: 241 KLATIVGCGTDGT 253


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 302 RLAPVDSCGPDGT 264
           +LA +  CG DGT
Sbjct: 241 KLATIVGCGTDGT 253


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 25  PDHRKGCVRFPSTKQQNRCWLIGRPHGLLH 114
           P   +G + FP+  Q N+ +   R H   H
Sbjct: 223 PFASRGSMHFPNQYQMNQEYRTDRKHTQQH 252


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 25  PDHRKGCVRFPSTKQQNRCWLIGRPHGLLH 114
           P   +G + FP+  Q N+ +   R H   H
Sbjct: 406 PFASRGSMHFPNQYQMNQEYRTDRKHTQQH 435


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,181
Number of Sequences: 336
Number of extensions: 2178
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)