Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20329
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 286  STGASRPNTPITSCTMHPSPPPAN 357
            S G++R N P++     P PPP N
Sbjct: 1844 SVGSAR-NIPVSGSPEPPPPPPRN 1866



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 317  SPAVRCIPPPRL 352
            +P  RC PPPR+
Sbjct: 1696 APNRRCPPPPRM 1707


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 262 RVPSGPQLSTGASRPNTPITSCTMHPSPPPANRXSG 369
           R P+G QL   A  P  PI + +     PP     G
Sbjct: 402 RSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPG 437



 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 268 PSGPQLSTGASRPNTPITSCTMHPSPP 348
           P   + STG+S P   +++  M   PP
Sbjct: 356 PKSSESSTGSSIPKLNLSTALMSQPPP 382


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 6   TELPKDSRSSKRMCSLSVN 62
           T L  DSRS++RM + SVN
Sbjct: 272 TVLWLDSRSTERMIAASVN 290


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 274  GPQLSTGASRPNTPITSCTMHPSPPPANR 360
            GP  S G   P  P    T+  SP P++R
Sbjct: 1356 GPSASGGRPVPERPERVPTVDLSPSPSDR 1384


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 100 EAVQ*ANTDSVAWLTESEHIL 38
           EA      D ++WL ESE +L
Sbjct: 234 EATTMQENDKMSWLFESEDVL 254


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 166 TSAVFSETVTTSLTMTSGYLMERSALRKAS 255
           TSA  +  +TT LTMT+     RS+L + S
Sbjct: 270 TSARVALGITTVLTMTTISTGVRSSLPRIS 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,414
Number of Sequences: 438
Number of extensions: 2833
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)