Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20329
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03310.1 68418.m00282 auxin-responsive family protein similar... 31 0.40
At1g17540.1 68414.m02157 protein kinase-related similar to serin... 29 0.92
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 28 2.1
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 2.8
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 28 2.8
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family... 28 2.8
At3g08670.1 68416.m01007 expressed protein 27 3.7
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 27 3.7
At5g15630.1 68418.m01829 phytochelatin synthetase family protein... 27 4.9
At4g23720.1 68417.m03413 expressed protein ; expression supporte... 27 4.9
At3g52115.1 68416.m05720 hypothetical protein 27 4.9
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 4.9
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g... 27 4.9
At4g11530.1 68417.m01850 protein kinase family protein contains ... 27 6.5
At2g11090.1 68415.m01187 expressed protein 27 6.5
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro... 27 6.5
At1g55940.1 68414.m06416 cytochrome P450, putative similar to SP... 27 6.5
At1g19640.1 68414.m02448 S-adenosyl-L-methionine:jasmonic acid c... 27 6.5
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam... 26 8.6
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 26 8.6
At3g48860.2 68416.m05337 expressed protein 26 8.6
At3g48860.1 68416.m05336 expressed protein 26 8.6
At2g16630.1 68415.m01909 proline-rich family protein contains pr... 26 8.6
>At5g03310.1 68418.m00282 auxin-responsive family protein similar to
indole-3-acetic acid induced protein ARG7 (SP:P32295)
[Vigna radiata]
Length = 114
Score = 30.7 bits (66), Expect = 0.40
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 168 FRGLLGDGNNEPYDDFRLPNGKICTSESESVTRTVWPAAVHRCKPPEHS 314
FR LL +E YDDF + K+C + E++ V RC P +S
Sbjct: 70 FRALLDQSKDEAYDDFTSGDSKLCIACDETLF-----LEVLRCASPRYS 113
>At1g17540.1 68414.m02157 protein kinase-related similar to
serine/threonine protein kinase Fen [Lycopersicon
esculentum] GI:1809259
Length = 733
Score = 29.5 bits (63), Expect = 0.92
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +1
Query: 244 RKASR*RVPSGPQLSTGASRPNTP--ITSCTMHPS----PPPANRXSGEYRRSGP 390
R ASR + P GP G P P + HPS P P + S E RS P
Sbjct: 155 RSASRPQTPQGPHTPQGPQTPQAPQHPPHPSKHPSMMSDPGPTSSTSSESGRSSP 209
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 304 PNTPITSCTMHPSPPPANRXSGEY 375
P+TP T+C PSPP + S Y
Sbjct: 58 PSTPTTACPPPPSPPSSGGGSSYY 81
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 268 PSGPQLSTGASRPNTPITSCTMHPSPPPANRXS 366
P G S P+TP + T P PPPA S
Sbjct: 148 PPGETPSPPKPSPSTPTPTTTTSPPPPPATSAS 180
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 277 PQLSTGASRPNTPITSCTMHPSPPPAN 357
PQL T S P HP PPP+N
Sbjct: 273 PQLPTQFSSQQEPYCPPPSHPQPPPSN 299
>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
protein Common family member: At2g32840 [Arabidopsis
thaliana]
Length = 332
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 277 PQLSTGASRPNTPITSCTMHPS-PPPA 354
P LST + P TP+ + PS PPPA
Sbjct: 16 PSLSTASETPVTPVNTVRPPPSQPPPA 42
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 181 SETVTTSLTMTSGYLMERSALRKASR*RVPSGPQLSTGASRPNTP 315
S + TS S Y+ S ++S PS P ++ ASR +TP
Sbjct: 177 SSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTP 221
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +3
Query: 24 SRSSKRMCSLSVNQATESVLAHWTASWPSAHLNLRCATLKLTASTWVNFRGLLGDGNNEP 203
SRSS R+ + + S + T + ++ N+ T +W + DG++E
Sbjct: 236 SRSSSRLLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWDGTTTSVNDGDDEL 295
Query: 204 YDDFRLPNGKIC 239
D+ LP + C
Sbjct: 296 DDNLDLPGRQGC 307
>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL4 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 431
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 169 SAVFSETVTTSLTMTSGYLMERSALRKASR*RVPSGPQLSTGASRPNTPITSCTMHPSP 345
S+ +++T+T + G ++S ++ S+ G L+T + NTP+ CT H P
Sbjct: 222 SSFYNDTITPCPSCACGCENKKSCVKADSKILTKKG--LNT-PKKDNTPLLQCTHHMCP 277
>At4g23720.1 68417.m03413 expressed protein ; expression supported
by MPSS
Length = 294
Score = 27.1 bits (57), Expect = 4.9
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 81 LAHWTASWPSAHLNLRCATLKLTASTWVNFRGLLGDGNNEPYDDFRLPNGKICTSESES- 257
L +W+ W + N++ LK+ V+FR L + + E R + K T + E+
Sbjct: 122 LGNWSNHWYTVPDNVKEIILKMKNPVEVSFRDLPKERDEEMLSRVRCVSFKAQTKDEEAT 181
Query: 258 -VTRTVWPAAVHRCKPPEHS 314
++R V P + ++S
Sbjct: 182 HISRMVIPGVCYGSSHGDYS 201
>At3g52115.1 68416.m05720 hypothetical protein
Length = 588
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 105 PSAHLNLRCATLKLTASTWVNFRGLLGDGNNEPYDDF 215
P A + + LK AS W + R G ++P+DDF
Sbjct: 422 PGAAKPPQLSGLKRPASIWRDTRSRQSPGGHDPHDDF 458
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 268 PSGPQLSTGASRPNTPITSCTMHPSPPPANRXSGEYRR 381
P G + G N+P++S H PPP N Y R
Sbjct: 251 PYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGR 288
>At1g69830.1 68414.m08034 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative similar to
SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
(1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
alpha-amylase [Malus x domestica] GI:7532799; contains
Pfam profile PF00128: Alpha amylase, catalytic domain
Length = 887
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 129 CATLKLTASTWVNFRG 176
C LKL +TW+N+RG
Sbjct: 363 CFVLKLNENTWLNYRG 378
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 305 RTLPSPAVRCIPPP---RLRTGLRGNIAA-QDPVIVM 403
++LP P V IPPP R T ++G I A P+IV+
Sbjct: 523 QSLPQPPVSLIPPPVSDRANTTIKGIIVAIVVPIIVI 559
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 256 R*RVPSGPQLSTGASRPNTPITSCTMHPSPP 348
R RVPS P L ++P+T I +H P
Sbjct: 74 RGRVPSSPSLDHSTTKPSTTIPITRLHTRLP 104
>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
protein
Length = 192
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 309 HSHHQLYDASLPPACEQXFGGISPLRTLSLS 401
H HH +DAS+PP+ SP + S S
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASASAS 165
>At1g55940.1 68414.m06416 cytochrome P450, putative similar to
SP:Q42569 from [Arabidopsis thaliana]
Length = 639
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 46 VRFPSTKQQNRCWLIGRPHGLLHI 117
V F KQ+NRC+++ P L+ I
Sbjct: 238 VNFEILKQENRCFIMSYPEALVRI 261
>At1g19640.1 68414.m02448 S-adenosyl-L-methionine:jasmonic acid
carboxyl methyltransferase (JMT) nearly identical to
gi:13676829
Length = 389
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 350 GGGEGCIVQLVMGVF-GRLAP 291
GGGE C V V G F GRL P
Sbjct: 129 GGGESCFVSAVPGSFYGRLFP 149
>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
protein similar to iturin A synthetase C [Bacillus
subtilis] GI:16040972; contains Pfam profile PF00501:
AMP-binding enzyme
Length = 1040
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 92 PMSQHRFCCLVDGKRTHPFR*SGILWKLRS 3
P +Q+ CCLVDG+ I+W+ R+
Sbjct: 871 PSTQNVICCLVDGQVIAMSPSGTIIWRYRT 900
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 280 QLSTGASRPNTPITSCTMHPSPPPANRXSGEYRRSGPCHCH 402
Q+ + P++P TS T PSP P +Y P H H
Sbjct: 305 QVRLSSILPHSPATSSTPSPSPQPETH---QYPHHHPHHHH 342
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 239 HFGKRVGNAYRLARSC-PQVQAARTLPSPAVRCIPPPRLRTGLRGNIAAQDP 391
+F ++V ++ R A + P + A T P+P +PP R+ +I DP
Sbjct: 136 NFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLMPPSRVSVKTPVSIPPLDP 187
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 239 HFGKRVGNAYRLARSC-PQVQAARTLPSPAVRCIPPPRLRTGLRGNIAAQDP 391
+F ++V ++ R A + P + A T P+P +PP R+ +I DP
Sbjct: 136 NFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLMPPSRVSVKTPVSIPPLDP 187
>At2g16630.1 68415.m01909 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 359
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 284 CPQVQAARTLPSPAVRCIPPPRL 352
CP+ A +P P V +PPP++
Sbjct: 148 CPKPPTAPVMPPPQVPVMPPPQV 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,082
Number of Sequences: 28952
Number of extensions: 214031
Number of successful extensions: 767
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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