Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20328
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   4.2  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   4.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.2  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   5.6  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.7  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    24   9.7  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 113 NKELEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 220
           N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 303 LSVADPQLVAVLHGVPFLSMIRLLTTFWMMEPLPWL 196
           LS  +P  ++ +H + F   ++    FWM  P+ W+
Sbjct: 15  LSRWNPMFISDVHKISFHPHLQRYIGFWMGFPIRWI 50


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 113 NKELEEKLYNSILTGDYDSAVRQSLE 190
           + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 67  DGEHARRXHHEKFHYDSC 14
           DG+H+   HH+KF  D+C
Sbjct: 430 DGKHSHSLHHDKF--DAC 445


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 190 FQALTDSTVVVAGEDAVVQFLLEFFV 113
           F  +T   V+V  EDAVV+F+L   V
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 54  ACSPSAPASLKCPR*A*AVLTKNSRRNCTTASSPATTTVLS 176
           A +P AP+ L     + A LT+ S    ++ + P+TT++ S
Sbjct: 561 AVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRS 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,930
Number of Sequences: 5004
Number of extensions: 31828
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)