BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbS20328 (458 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 27 5.5 11_06_0335 + 22441240-22441548,22441958-22442028,22442321-224423... 27 7.3 04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 27 7.3 07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 27 9.6 07_01_0262 + 1957973-1958220,1958272-1958935 27 9.6 03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223 27 9.6 >10_07_0057 + 12460986-12461036,12461108-12461161,12461420-12461482, 12461666-12461716,12461996-12462057,12462156-12462318, 12462829-12462939,12463029-12463166,12463248-12463322, 12463420-12463540,12464827-12464981,12465080-12465154, 12465270-12465473,12465670-12465786 Length = 479 Score = 27.5 bits (58), Expect = 5.5 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 347 MMSLKFNGKYFLTISCPLPTHSL*QYSMVFR 255 MM L GK I CP+P+HSL SMV R Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLR 181 >11_06_0335 + 22441240-22441548,22441958-22442028,22442321-22442381, 22443252-22443326,22443431-22443478,22443565-22443666, 22443971-22444032,22444187-22444284,22444361-22444470 Length = 311 Score = 27.1 bits (57), Expect = 7.3 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2 Query: 430 SHSRDWLWNRASEXG 386 +HSR+WLW SE G Sbjct: 33 THSRNWLWRLVSEPG 47 >04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594, 8043691-8043770,8045082-8046322,8047077-8047507 Length = 671 Score = 27.1 bits (57), Expect = 7.3 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +2 Query: 119 ELEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKNGTPWSTATSCGSAT 298 E+ EKLYN + + + Y GK I ++ N + K+ WS A G A Sbjct: 222 EMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPA-KDVVSWS-AMIAGYAE 279 Query: 299 DRKLLES 319 K +E+ Sbjct: 280 SSKPMEA 286 >07_03_1732 + 29109612-29110623,29110712-29110786,29111176-29111333, 29111714-29111937,29112136-29112745 Length = 692 Score = 26.6 bits (56), Expect = 9.6 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = +2 Query: 125 EEKLY-----NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIID 250 EEKLY NS + YD +Q + ES+GK I+ + + D Sbjct: 407 EEKLYDEVKVNSAICRRYDEKCKQLRDQESRGKNQILVDFTRATVKD 453 >07_01_0262 + 1957973-1958220,1958272-1958935 Length = 303 Score = 26.6 bits (56), Expect = 9.6 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +3 Query: 36 SWXXRRACSPSAPASLKCPR*A*AVLTKNSRRNCTTASSPATTTVLSVRAWNMR 197 SW R+A S SAP ++ CP + C+ +SP TT ++ R + R Sbjct: 84 SWL-RQASSSSAPVAVGCPT-RRRPSPAAAAEKCSLPASPPTTAGVARRTYGTR 135 >03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223 Length = 219 Score = 26.6 bits (56), Expect = 9.6 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -2 Query: 145 AVVQFLLEFFVRTAHAYRGHFSDAGADGEHARRXHH 38 A Q LE F+ A A G GADG R HH Sbjct: 78 AAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHH 113 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,835,125 Number of Sequences: 37544 Number of extensions: 227440 Number of successful extensions: 636 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 623 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 636 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 907440304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -