Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20328
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    27   5.5  
11_06_0335 + 22441240-22441548,22441958-22442028,22442321-224423...    27   7.3  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    27   7.3  
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113...    27   9.6  
07_01_0262 + 1957973-1958220,1958272-1958935                           27   9.6  
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223     27   9.6  

>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -1

Query: 347 MMSLKFNGKYFLTISCPLPTHSL*QYSMVFR 255
           MM L   GK    I CP+P+HSL   SMV R
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLR 181


>11_06_0335 +
           22441240-22441548,22441958-22442028,22442321-22442381,
           22443252-22443326,22443431-22443478,22443565-22443666,
           22443971-22444032,22444187-22444284,22444361-22444470
          Length = 311

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 430 SHSRDWLWNRASEXG 386
           +HSR+WLW   SE G
Sbjct: 33  THSRNWLWRLVSEPG 47


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 119 ELEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKNGTPWSTATSCGSAT 298
           E+ EKLYN +   +   +      Y   GK  I  ++ N +   K+   WS A   G A 
Sbjct: 222 EMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPA-KDVVSWS-AMIAGYAE 279

Query: 299 DRKLLES 319
             K +E+
Sbjct: 280 SSKPMEA 286


>07_03_1732 +
           29109612-29110623,29110712-29110786,29111176-29111333,
           29111714-29111937,29112136-29112745
          Length = 692

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query: 125 EEKLY-----NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIID 250
           EEKLY     NS +   YD   +Q  + ES+GK  I+ +     + D
Sbjct: 407 EEKLYDEVKVNSAICRRYDEKCKQLRDQESRGKNQILVDFTRATVKD 453


>07_01_0262 + 1957973-1958220,1958272-1958935
          Length = 303

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 36  SWXXRRACSPSAPASLKCPR*A*AVLTKNSRRNCTTASSPATTTVLSVRAWNMR 197
           SW  R+A S SAP ++ CP          +   C+  +SP TT  ++ R +  R
Sbjct: 84  SWL-RQASSSSAPVAVGCPT-RRRPSPAAAAEKCSLPASPPTTAGVARRTYGTR 135


>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
          Length = 219

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 145 AVVQFLLEFFVRTAHAYRGHFSDAGADGEHARRXHH 38
           A  Q  LE F+  A A  G     GADG    R HH
Sbjct: 78  AAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHH 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,835,125
Number of Sequences: 37544
Number of extensions: 227440
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)