Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20328
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)        31   0.61 
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     29   1.4  
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)                27   7.5  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 27   7.5  
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   27   9.9  

>SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)
          Length = 477

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = -3

Query: 417 IGCGTELQSXVVVSVNDLDIVSGHDESKV*WKVLSNNFLSVADPQLVAVLHGVPFLSMIR 238
           I CG +L    +  + +L +     E +V WK L        +  +  +  G  +L  + 
Sbjct: 210 IACGGDLNRLDICRLEELTVFPEVSERQV-WKALEGIKFKKIETDIYKI-DGKEYLITVD 267

Query: 237 LLTTFWMMEPLP 202
             + FW ++PLP
Sbjct: 268 YFSNFWEIDPLP 279


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 206 CLGSHIPSSDGQHCRSRR*G--CCCTVSPRVLC 114
           C GSH+   DG  C  +R G   CC +   V C
Sbjct: 551 CEGSHLACPDGTTCCKKRSGGYACCPIPKAVCC 583


>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
          Length = 132

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/49 (18%), Positives = 28/49 (57%)
 Frame = +2

Query: 113 NKELEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKNG 259
           ++ ++ K  N++ + D++   ++  +Y+S  K   ++ +++  I  +NG
Sbjct: 8   SRRIDYKALNNVSSADFNFDFQRKRKYKSGSKVYDVERIISQRITSRNG 56


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 235 QPDH*QERNTMEYCYKLWVGNG 300
           +P H    +T++Y Y+LW G G
Sbjct: 753 RPRHPSSTSTVKYRYRLWTGKG 774


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 442 RRQFSHSRDWLWNRASEXGCSFCK 371
           +RQ   ++DWL N A    C F K
Sbjct: 631 QRQLEANKDWLVNTACRGSCKFLK 654


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,634
Number of Sequences: 59808
Number of extensions: 257468
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)