Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20328
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    30   0.93 
AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical ...    27   6.6  

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 137 YNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKNGTP 265
           YN+   GD +  +     YE++ + S + NV NNLI  ++G P
Sbjct: 492 YNADFDGD-EMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 533


>AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical
           protein C52E2.8 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 375 VNDLDIVSGHDESKV*WKVLSNNFLSVADP 286
           ++ L I SG+   KV WK+L +NFLS A P
Sbjct: 293 LSGLQITSGN--YKVAWKILDHNFLSNARP 320


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 322 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG 450
           FP+N+  I + NY+     +YN+ LK     T+  N+ +   DG
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDG 360


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 286 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 372
           W+ +GQEI R Y PL   N   +  G Y++I+
Sbjct: 13  WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 253 ERNTMEYCYKLWVGNGQEIVRKYFPL--NFRLIMAGNYV 363
           E N  + CY L   NG E+VR +  L  NF  I+  N+V
Sbjct: 180 ENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFV 217


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 253 ERNTMEYCYKLWVGNGQEIVRKYFPL--NFRLIMAGNYV 363
           E N  + CY L   NG E+VR +  L  NF  I+  N+V
Sbjct: 180 ENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFV 217


>AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical
           protein B0546.5 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 253 ERNTMEYCYKLWVGNGQEIVRKYFPL--NFRLIMAGNYV 363
           E N  + CY L   NG E+VR +  L  NF  I+  N+V
Sbjct: 180 ENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFV 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,763,908
Number of Sequences: 27780
Number of extensions: 187902
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)