Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20328
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   6.4  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 143 SILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKNGTPWSTATSCG 289
           +I++ D+D +     EY +  +   I +V N   +DK+    +T  +CG
Sbjct: 72  NIISSDHDDSDE---EYAANSQPPRITSVPNTSRLDKSEISLATKQACG 117


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 306 FLSVADPQLVAVLHGVPFLSMIRLLTTFWMMEPLPWL 196
           +LS  DP +V     +P   + R L  F+  E LP++
Sbjct: 319 YLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFI 355


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 306 FLSVADPQLVAVLHGVPFLSMIRLLTTFWMMEPLPWL 196
           +LS  DP +V     +P   + R L  F+  E LP++
Sbjct: 25  YLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,528
Number of Sequences: 438
Number of extensions: 2449
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)