Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20325
         (658 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    37   5e-04
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    28   0.30 
AY187042-1|AAO39756.1|  248|Anopheles gambiae putative antennal ...    24   4.9  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   4.9  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 37.1 bits (82), Expect = 5e-04
 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = +2

Query: 278 LEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAALDDKLSNADLDGIIAEI--DT 451
           +++E  +   ++  E  +LYD+  +G +  + L   L AL ++L + +LD ++ +     
Sbjct: 75  VKKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPE 134

Query: 452 DGSGTVDFDEFMEMM 496
           D  G + +  F++ M
Sbjct: 135 DDDGNIPYAPFLKKM 149



 Score = 26.2 bits (55), Expect = 0.91
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 326 FRLYDREGNGYITTSTLKEILAALDDKLSNADLDGIIAEIDTDGSGTVDFDEFMEMMT 499
           F +YD EG+G +    L   L AL+      +L G +      G   + F+EF+ + +
Sbjct: 17  FSVYDWEGSGQMDAMDLGNALRALNLN-PTIELIGKMGGTQKRGEKKIKFEEFLPIFS 73


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 562 YKINTNHNKTIVNPCFSGLVSSHHLHELIKVHSS 461
           Y   + HN     P  SGL + HH H+ I  + S
Sbjct: 147 YSNYSQHNFQTAGPISSGLYNGHHPHQTIATYIS 180


>AY187042-1|AAO39756.1|  248|Anopheles gambiae putative antennal
           carrier protein TOL-2 protein.
          Length = 248

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 311 LVAWLQRLPLQGNGKQYYRAIKV 243
           L+ W   L  + NGK+YY+  K+
Sbjct: 151 LMKWNGALEKRANGKEYYQMNKI 173


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 86  AA*SIPDV*HHEVWLHRRAEDLH 154
           AA + P    + VW HR   DLH
Sbjct: 889 AAAAAPTASRYAVWAHRMIPDLH 911


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,072
Number of Sequences: 2352
Number of extensions: 12359
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)