Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20325
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.004
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   1.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 278 LEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAA--LDDKLSNADLDGIIAEIDT 451
           L  +D  + +  +   F  YDR  NG +    L++      L++     +L  +I+  DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285

Query: 452 DGSGTVDFDEF 484
           DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 219 DPENSGKINFDGSVILLPISLKRKTLKPCNKN 314
           D  N GKIN D   +LL I    K     ++N
Sbjct: 45  DDINEGKINMDDENVLLFIECTMKKFNVVDEN 76


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 353 RYLHGRII*KLLSVLVAWLQRLPLQGNGKQYYRAI 249
           R L   I+  ++S L++ + +L  +G+G+  YRA+
Sbjct: 105 RLLKMFILPLIVSSLISGMAQLDPKGSGRMGYRAL 139


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 143 EDLHHSQHNGTAIR*LR 193
           E +HH  HNG   R L+
Sbjct: 20  ESVHHCHHNGVVHRDLK 36


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 307 LHGFSVFLFKEMGSNITEPSKLIFPL 230
           LH F+    +E+   I   S+++FP+
Sbjct: 429 LHNFTTMTPQEIAQWIDRRSRIVFPV 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,180
Number of Sequences: 438
Number of extensions: 3467
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)