Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20323
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0515 + 14930736-14932697                                         30   0.73 
04_04_0347 + 24564589-24565296                                         29   1.3  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   1.3  
02_04_0392 - 22578488-22578811,22578895-22578900                       27   5.1  
02_01_0393 - 2863335-2864534                                           27   6.8  
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949...    27   9.0  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    27   9.0  
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    27   9.0  

>05_03_0515 + 14930736-14932697
          Length = 653

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 20  IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 196
           + L +C +   V  +P  +    +W YH     + YV +S+  ++ S WSN   +   L 
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367

Query: 197 NMMKE 211
           +   +
Sbjct: 368 SCFSD 372


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 17  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 118
           M  L+   LLAA SAA   +H  ++ PY HH+ P+
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 128  VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEA 259
            +++++L+       LA+E+Q  D+++ EL  K  S  +  R+EA
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEA 1341


>02_04_0392 - 22578488-22578811,22578895-22578900
          Length = 109

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 65  PQYYHGSSHWPYHHYDPF 118
           P YY+   ++PYHHY P+
Sbjct: 91  PPYYY---YYPYHHYSPY 105


>02_01_0393 - 2863335-2864534
          Length = 399

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +1

Query: 43  AGGGLCRATVLPWLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVE 222
           AG GL     LP L     S +R + S+ +    GH   L++     AT G     +   
Sbjct: 2   AGAGLPSWWALPLLRVPTSSAVRIIPSIAAAAARGHDLLLLRASSSEATRGFSSSTSAPA 61

Query: 223 VPQH 234
            P H
Sbjct: 62  APAH 65


>05_03_0190 +
           9485701-9485806,9487182-9487368,9489662-9489733,
           9490089-9490160,9490514-9490585,9490845-9490916,
           9491355-9491426,9491503-9491577,9492008-9492073,
           9492144-9492188,9492276-9492340,9492429-9492811,
           9492878-9493076,9493150-9493308,9493386-9493504,
           9493652-9493862,9493993-9494224,9494307-9494457,
           9494550-9494870
          Length = 892

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 161 WSNLANEMQHLDNMMKELSLKFPSIINEGRVEATSIRYLFTCLVTN 298
           +S  AN + +LD    +LS +FPS +N+  ++   +   F  + TN
Sbjct: 234 FSKFAN-LTYLDFSYNQLSGRFPSWVNQNNLQLNLVANNFVLVGTN 278


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  TRMIALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQH 190
           T ++ L++C +L  ++     + G++ +     D  SP+      D ++ WS+ +N + H
Sbjct: 79  TVIVTLLVCVILTTIA-----FLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSNLVSH 133


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 50  AVSAAPQYYHGSSHWPYHHY 109
           A S AP ++HG  H  +HH+
Sbjct: 342 APSPAPMHHHGHHHHHHHHH 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,967,929
Number of Sequences: 37544
Number of extensions: 263889
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)