Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20323
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)                28   4.0  
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)           28   4.0  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   5.3  
SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)                   27   7.0  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)                   27   7.0  
SB_1051| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   9.2  
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)                27   9.2  
SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)              27   9.2  

>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 259 DKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNH-YLKIQNLPW 393
           D Y++  +    EQ+D N   K G   VQ    FN+ Y  I+ L W
Sbjct: 22  DDYEVDENSDDEEQEDPNDYCKGGYHPVQLGDLFNNRYSVIRKLGW 67


>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
          Length = 750

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 291 TRQVNRYLILVASTRPSFIMLGNFNDSSFIMLSKCCISLARLDQSECV 148
           T   N   ILV +T+  F +LGN  D   +++ +   SL  +D  +C+
Sbjct: 139 TYGTNILSILVPNTKLGFRLLGNLTDHVDVLIEEWFPSLNGVDPVQCL 186


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 128  VRESMLDTHSLWSNLANEMQHLDNMMKELSL 220
            + ES L+TH +  NLA E+  LDN   E++L
Sbjct: 4396 IAESQLETHDVL-NLAYEITELDNSPPEIAL 4425


>SB_1068| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 422

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 79  WLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRN-ATLG 195
           W+V L+  P+ PL    S KH+   F     C++N AT+G
Sbjct: 368 WMVFLSC-PVNPLVYAYSSKHIRDAFKRGLKCKKNTATIG 406


>SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)
          Length = 835

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 17  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPFSPYVRESMLDTHSLW 163
           M+ ++  G+   VS      HG ++ PY   YDP  P    + LD ++LW
Sbjct: 65  MLLMIEKGIRGGVSMISNR-HGEANNPYMKEYDPDLPTKYITYLDANNLW 113


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 246 DAWRRQVSDIYSPAWLRTERHQRESEKWSADG 341
           DA+ R VSD+Y     R +R +RE E  + DG
Sbjct: 201 DAYER-VSDLYGSKEDREDREEREDEPTAPDG 231


>SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 17  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPFSPYVRESMLDTHSLW 163
           M+ ++  G+   VS      HG ++ PY   YDP  P    + LD ++LW
Sbjct: 801 MLLMIEKGIRGGVSMISNR-HGEANNPYMKEYDPDLPTKYITYLDANNLW 849


>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
          Length = 566

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = +2

Query: 83  SSHWP---YHHYDPFSPYVRESML----DTHSLWSNLANEM-QHLDN---MMKELSLKFP 229
           S  WP   YHH +  S Y  +S L    ++++L S  A E+  HL         L +KFP
Sbjct: 173 SHDWPQGVYHHGNVQSLYRYKSFLKPEIESNTLGSAPAGELLTHLQPSYWFSAHLHVKFP 232

Query: 230 SIINEGRVEATSIRYLFTCL 289
           +II  G  + T    L  CL
Sbjct: 233 AIIPHGGDKNTKFLALDKCL 252


>SB_1051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 175 GKVGPKRMCVQHAFPNV 125
           GK GP+ +C+ + +PNV
Sbjct: 80  GKFGPEELCLSNVYPNV 96


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 68  QYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNL 172
           +YY G+ H   H+  P  PYV      +H   +NL
Sbjct: 502 RYYPGTRHESQHYMPPRQPYVTTHNHHSHDHNNNL 536


>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
          Length = 325

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 44  LAAVSAAPQYYHGSSHW-PYHHYDPFSPY 127
           L+   A P +YH   H  PYH++ P  PY
Sbjct: 285 LSTTLATPCHYHYHHHHPPYHYHYPPLPY 313


>SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 478

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = +2

Query: 98  YHHYDPFSPYVRESML---DTHSLWSNLANEMQHLDNMMKEL----SLK---FPSIIN-E 244
           YH Y     YV + ++    TH    NL+   + +DN  + L    SL    F  ++N E
Sbjct: 394 YHSYSQ-DDYVAQFLILYAKTHQDSVNLSQIYEVIDNKRRRLESVNSLNAHYFSRLLNAE 452

Query: 245 GRVEATSIRYLFTCLVTNRK 304
             ++  S++  F CL  NRK
Sbjct: 453 AMIDCLSLKPAFPCLNVNRK 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,590,334
Number of Sequences: 59808
Number of extensions: 293124
Number of successful extensions: 1132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)