Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20323
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X65024-1|CAA46158.1|  823|Homo sapiens Xeroderma Pigmentosum Gro...    30   4.1  
D21089-1|BAA04651.1|  940|Homo sapiens XP-C repair complementing...    30   4.1  
BC016620-1|AAH16620.1|  940|Homo sapiens xeroderma pigmentosum, ...    30   4.1  
AY131066-1|AAM77801.1|  940|Homo sapiens xeroderma pigmentosum, ...    30   4.1  
AK222844-1|BAD96564.1|  872|Homo sapiens xeroderma pigmentosum, ...    30   4.1  
AF261901-1|AAF87574.1|  940|Homo sapiens xeroderma pigmentosum g...    30   4.1  
X95701-1|CAA64997.1|  449|Homo sapiens GATA-6 DNA binding protei...    29   7.2  
U66075-1|AAC50941.1|  449|Homo sapiens hGATA-6 protein.                29   7.2  
D87811-1|BAA22621.1|  449|Homo sapiens GATA-6 protein.                 29   7.2  
BC001201-1|AAH01201.1|  336|Homo sapiens ST6 (alpha-N-acetyl-neu...    29   7.2  
AL035409-3|CAM28274.1|  336|Homo sapiens ST6 neuraminyl-2,3-beta...    29   7.2  
AK223547-1|BAD97267.1|  595|Homo sapiens GATA binding protein 6 ...    29   7.2  
AK056241-1|BAB71127.1|  336|Homo sapiens protein ( Homo sapiens ...    29   7.2  
AJ507292-1|CAD45372.1|  336|Homo sapiens alpha 2,6-sialyltransfe...    29   7.2  
AF540388-1|AAO16209.1|  370|Homo sapiens c-maf proto-oncogene pr...    29   7.2  

>X65024-1|CAA46158.1|  823|Homo sapiens Xeroderma Pigmentosum Group 
           C Complementing factor protein.
          Length = 823

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 246 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 338
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 458 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 488


>D21089-1|BAA04651.1|  940|Homo sapiens XP-C repair complementing
           protein (p125) protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 246 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 338
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


>BC016620-1|AAH16620.1|  940|Homo sapiens xeroderma pigmentosum,
           complementation group C protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 246 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 338
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


>AY131066-1|AAM77801.1|  940|Homo sapiens xeroderma pigmentosum,
           complementation group C protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 246 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 338
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


>AK222844-1|BAD96564.1|  872|Homo sapiens xeroderma pigmentosum,
           complementation group C variant protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 246 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 338
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 507 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 537


>AF261901-1|AAF87574.1|  940|Homo sapiens xeroderma pigmentosum
           group C protein protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 246 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 338
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


>X95701-1|CAA64997.1|  449|Homo sapiens GATA-6 DNA binding protein
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 74  YHGSSHWPYHHYDPFSPYV 130
           YH   H  +HH  P+SPYV
Sbjct: 177 YHHHHHHHHHHPSPYSPYV 195


>U66075-1|AAC50941.1|  449|Homo sapiens hGATA-6 protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 74  YHGSSHWPYHHYDPFSPYV 130
           YH   H  +HH  P+SPYV
Sbjct: 177 YHHHHHHHHHHPSPYSPYV 195


>D87811-1|BAA22621.1|  449|Homo sapiens GATA-6 protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 74  YHGSSHWPYHHYDPFSPYV 130
           YH   H  +HH  P+SPYV
Sbjct: 177 YHHHHHHHHHHPSPYSPYV 195


>BC001201-1|AAH01201.1|  336|Homo sapiens ST6
           (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
           3)-N-acetylgalactosaminid protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 11  TRMIALVLCGLLAAVSAAP-QYYHGSSH--WPYHHYDPFSP 124
           T  IAL LC  +      P  +    +H   PYH+Y+PF P
Sbjct: 237 TMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGP 277


>AL035409-3|CAM28274.1|  336|Homo sapiens ST6
           neuraminyl-2,3-beta-galactosyl-1,
           3)-N-acetylgalactosaminide member 2 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 11  TRMIALVLCGLLAAVSAAP-QYYHGSSH--WPYHHYDPFSP 124
           T  IAL LC  +      P  +    +H   PYH+Y+PF P
Sbjct: 237 TMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGP 277


>AK223547-1|BAD97267.1|  595|Homo sapiens GATA binding protein 6
           variant protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 74  YHGSSHWPYHHYDPFSPYV 130
           YH   H  +HH  P+SPYV
Sbjct: 323 YHHHHHHHHHHPSPYSPYV 341


>AK056241-1|BAB71127.1|  336|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31679 fis, clone NT2RI2005150, highly similar to
           Mus musculus ST6GalNAc V mRNA for GD1 alpha synthase. ).
          Length = 336

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 11  TRMIALVLCGLLAAVSAAP-QYYHGSSH--WPYHHYDPFSP 124
           T  IAL LC  +      P  +    +H   PYH+Y+PF P
Sbjct: 237 TMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGP 277


>AJ507292-1|CAD45372.1|  336|Homo sapiens alpha
           2,6-sialyltransferase protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 11  TRMIALVLCGLLAAVSAAP-QYYHGSSH--WPYHHYDPFSP 124
           T  IAL LC  +      P  +    +H   PYH+Y+PF P
Sbjct: 237 TMTIALELCDRINVYGMVPPDFCRDPNHPSVPYHYYEPFGP 277


>AF540388-1|AAO16209.1|  370|Homo sapiens c-maf proto-oncogene
           protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 17  MIALVLCGLLAAVSAAPQYYHGSSHWPYHHYDP 115
           +++ V+    A   AAP Y+H   H   HH+ P
Sbjct: 163 VVSAVIAAAAAQSGAAPHYHHHHHHAAGHHHHP 195


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,777,844
Number of Sequences: 237096
Number of extensions: 1412654
Number of successful extensions: 3524
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3524
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)