Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20323
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    33   0.093
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ...    29   2.0  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   2.7  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   2.7  
AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical...    27   4.6  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z49969-1|CAA90266.2|  232|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U70845-1|AAB09098.1|   79|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 33.1 bits (72), Expect = 0.093
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 26  LVLCGLLAAVSAAPQYYHGSSHWPYHHYDP 115
           L LC LLA  SA   YY  S + PY++Y P
Sbjct: 5   LALCSLLAVASAQYLYYPTSYYTPYYYYYP 34


>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
           protein T01A4.1a protein.
          Length = 1217

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 384 VLYFQVMIKSTVSLHHQHSIFRFHVDVFLFV---TRQVNRYLILVASTRPSF 238
           VL   ++I S+ S  HQHS+    + V L +    R  N +L+ +A ++P F
Sbjct: 6   VLLLSLVISSSSSSSHQHSLLPIDIVVGLPIEEGDRGKNPFLLTLAKSKPVF 57


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 107  NGDT-ANVTSHGSTVARQRPPPAVRTTLRRS 18
            NG +  +VT++G  V R  PP ++  TLRR+
Sbjct: 1866 NGSSMGSVTTNGGRVVRPSPPNSMNVTLRRA 1896


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 107  NGDT-ANVTSHGSTVARQRPPPAVRTTLRRS 18
            NG +  +VT++G  V R  PP ++  TLRR+
Sbjct: 1866 NGSSMGSVTTNGGRVVRPSPPNSMNVTLRRA 1896


>AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical
           protein Y105E8A.25 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  LAAVSAAPQYYHGSSHWPYHHYDPFSPYV 130
           L A+S   ++   S H PY+HY P S  V
Sbjct: 181 LPAISEESEHEQQSIHIPYNHYPPHSSSV 209


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +2

Query: 71  YYHGSSHWPY---HHYDPFSPYVR 133
           YYHG   W +   HHY PF   VR
Sbjct: 532 YYHGCVSWSWFYPHHYAPFISDVR 555


>Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical
           protein C45B11.3 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +1

Query: 19  DRLSVVRTAGGGLCRATVLPWLV------TLAVSPLRPLQSLRSGKHVGHTFALVQPCQR 180
           D +  + T G  L   T LP+L        L +SP   +++   G HVG+T A       
Sbjct: 122 DLMHSINTRGTYLLTKTCLPYLKKGKNPHVLNISPPLDMEAKWFGPHVGYTMAKFG--MS 179

Query: 181 NATLGQHDE 207
              LG H+E
Sbjct: 180 MCVLGHHEE 188


>Z49969-1|CAA90266.2|  232|Caenorhabditis elegans Hypothetical
           protein W01C9.1 protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 339 HQHSI--FRFHVDVFLFVTRQVNRYLILV---ASTRPSF 238
           H+HS   F FH DVF   +    RYL+ V   A+ +P F
Sbjct: 30  HKHSTRSFHFHFDVFAPYSAFTLRYLVFVGAQAAKKPMF 68


>U70845-1|AAB09098.1|   79|Caenorhabditis elegans Hypothetical
           protein F22H10.3 protein.
          Length = 79

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 17  MIALVLCGLLAAVSAAPQYYHGSSHW-PYHHY 109
           M+A  + G+   V    + YH   HW P+HH+
Sbjct: 45  MMAAPMYGMPPPVVVIEEPYHHHHHWNPFHHH 76


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 166 GPKRMCVQHAFPNVRTEGVVMVIRP 92
           GP +    H+F N+ T G ++ IRP
Sbjct: 848 GPLKFTCPHSFMNISTGGQIISIRP 872


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 166 GPKRMCVQHAFPNVRTEGVVMVIRP 92
           GP +    H+F N+ T G ++ IRP
Sbjct: 848 GPLKFTCPHSFMNISTGGQIISIRP 872


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 166 GPKRMCVQHAFPNVRTEGVVMVIRP 92
           GP +    H+F N+ T G ++ IRP
Sbjct: 870 GPLKFTCPHSFMNISTGGQIISIRP 894


>AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical
           protein T25D3.2 protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 151 TFALVQPCQRNATLGQHDEGAVVEVPQHYKRR 246
           T+   +  QRN  + ++ E  V  +P+HYK R
Sbjct: 21  TWDKAERIQRNEEIFKNSESVVHRLPEHYKTR 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,528,989
Number of Sequences: 27780
Number of extensions: 211262
Number of successful extensions: 603
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)