Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20323
(445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22060.1 68414.m02759 expressed protein 31 0.26
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 29 1.4
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 4.3
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras... 27 4.3
At5g47420.1 68418.m05843 expressed protein contains Pfam domain,... 27 5.7
At3g02980.1 68416.m00293 GCN5-related N-acetyltransferase (GNAT)... 27 5.7
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 27 5.7
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 27 5.7
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 27 7.5
At4g17420.1 68417.m02608 expressed protein contains Pfam domain,... 27 7.5
At5g37550.1 68418.m04522 expressed protein 26 10.0
At5g27920.1 68418.m03354 F-box family protein contains similarit... 26 10.0
At3g53030.1 68416.m05845 protein kinase family protein contains ... 26 10.0
At3g18370.1 68416.m02336 C2 domain-containing protein contains P... 26 10.0
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 26 10.0
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 31.5 bits (68), Expect = 0.26
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 134 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGR---VEATSIRYLFTCLVTNRK 304
E MLDT +S++ E++ + + +LSLKF + E + + ++R ++ NR
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGERQKLMMTLKNVRASKKAMLLNRS 1991
Query: 305 TS 310
+S
Sbjct: 1992 SS 1993
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +1
Query: 109 RPLQSLRSGKHVGHTFALVQ---PCQRNA-TLGQHDEGAVVEVPQHYKRRTRGGDKYQIS 276
R +Q +G T L+ RNA + G +VE H + +Y
Sbjct: 534 RVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTL 593
Query: 277 IHLPGYEQKDINVKAKNG 330
+HL E++DINV K G
Sbjct: 594 VHLQQIEKQDINVSVKIG 611
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 152 HSLWSNLANEMQHLDNMMKELSLKFP 229
HS W + +E +H+ N E+ +K P
Sbjct: 686 HSTWEEVKSEREHIKNSYAEVEMKEP 711
>At4g34920.1 68417.m04951 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
3.1.4.10) (Phosphatidylinositol-specific phospholipase
C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
monocytogenes]
Length = 318
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 119 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKF 226
S Y++++ +DT W+ + ++HL S KF
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKF 244
>At5g47420.1 68418.m05843 expressed protein contains Pfam domain,
PF01987: Protein of unknown function
Length = 282
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 113 PFSPYVRESMLDTHSLWSNLANEMQHLDNMMK 208
PF PYV +S DT + + L E Q + M+K
Sbjct: 9 PFQPYVYQSQQDTITPFQILGGESQVVQIMLK 40
>At3g02980.1 68416.m00293 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile: PF00583
acetyltransferase (GNAT) family
Length = 247
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 381 LYFQVMIKSTVSLHHQHSIFRFHVDVFLFV 292
LY ++M + LH + I R H D FLFV
Sbjct: 165 LYKRLMFRCVRRLHGFYLINRHHFDAFLFV 194
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 267 ILVASTRPSFIMLGNFNDSSFIMLSKC 187
I+V + RPS ++ +FN+ SFI + C
Sbjct: 101 IVVHNVRPSCFVMSSFNNVSFIESASC 127
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 267 ILVASTRPSFIMLGNFNDSSFIMLSKC 187
I+V + RPS ++ +FN+ SFI + C
Sbjct: 101 IVVHNVRPSCFVMSSFNNVSFIESASC 127
>At4g34930.1 68417.m04952 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
(Phosphatidylinositol- specific phospholipase C)
(PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
Length = 391
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 119 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKF 226
S Y++++ +DT W+ + ++HL S KF
Sbjct: 276 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPISSRKF 311
>At4g17420.1 68417.m02608 expressed protein contains Pfam domain,
PF01987: Protein of unknown function
Length = 285
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 113 PFSPYVRESMLDTHSLWSNLANEMQHLDNMMK 208
PF PYV +S DT + + L E Q + M+K
Sbjct: 9 PFQPYVYQSQEDTITPFQILGGEAQVVQIMLK 40
>At5g37550.1 68418.m04522 expressed protein
Length = 230
Score = 26.2 bits (55), Expect = 10.0
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 119 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEATSIRYLFTCLV 292
S + E L T W++ QH D+ M + L++ S G V+ SIR L+ ++
Sbjct: 135 SKRIDEGSLPTIGFWNDHG---QHYDHNMLQKKLEYDSKQENGLVKKMSIRNLWKGMI 189
>At5g27920.1 68418.m03354 F-box family protein contains similarity
to leucine-rich repeats containing F-box protein FBL3
GI:5919219 from [Homo sapiens]
Length = 642
Score = 26.2 bits (55), Expect = 10.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Frame = -2
Query: 351 VSLHHQHSIFRFHVDVFLF--------VTRQVNRYLILVASTRPSFIMLGNFNDSSFIML 196
VSL SI R H D+ L V+ +Y+ + + +I + +DSS + L
Sbjct: 261 VSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLKYIKGLKHLKTIWIDGAHVSDSSLVSL 320
Query: 195 SKCCISLARLDQSECV 148
S C SL + S CV
Sbjct: 321 SSSCRSLMEIGLSRCV 336
>At3g53030.1 68416.m05845 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 529
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 69 STTMARHIGRITITTPSVLTFGKACWTHIRFGPTLPTK 182
S + RH+ ++ FG ACWT+ +F + T+
Sbjct: 291 SRSSRRHLVASADLKCKLVDFGNACWTYKQFTSDIQTR 328
>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 815
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 176 NEMQHLDNMMKELSLKFPSIINEGRVE 256
N+ L N MK++ +KF ++I++G +E
Sbjct: 735 NKALLLSNQMKQVMIKFQNLIDDGDLE 761
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 267 ILVASTRPSFIMLGNFNDSSFIMLSKC 187
I+V + RPS ++ +FN SFI + C
Sbjct: 113 IVVHNVRPSCFVMSSFNHVSFIESASC 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,013,253
Number of Sequences: 28952
Number of extensions: 197612
Number of successful extensions: 705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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