Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20321
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 134 1e-32
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 46 3e-06
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 40 2e-04
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 38 0.001
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 1.3
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 26 2.9
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 26 3.8
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 6.7
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 6.7
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 6.7
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 8.9
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 134 bits (323), Expect = 1e-32
Identities = 60/100 (60%), Positives = 75/100 (75%)
Frame = +3
Query: 216 LACCFMPR*RSVRWDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYS 395
L CF + WD EG++Y DFLSAYSAVNQGHCHP+IIEAL +QA +TL SRAFY+
Sbjct: 31 LPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSRAFYN 90
Query: 396 DQLGKYEKYMTELFGYDRLLPMNTGVEGGESACKIARNGG 515
D+ G + KY+TE FGY+ ++PMNTG E E+ACK+AR G
Sbjct: 91 DKFGPFAKYITEYFGYEMVIPMNTGAEAVETACKLARLWG 130
Score = 31.5 bits (68), Expect = 0.077
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 142 MAEQNLSSKEIFQLEDKYGCRNYAPLPVALCRGEGVFV 255
+ S+++I LE++Y NY PLPV + +G V
Sbjct: 6 LLHNTFSTEQIEVLENEYAAHNYHPLPVCFSKAKGAKV 43
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 46.4 bits (105), Expect = 3e-06
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Frame = +3
Query: 246 SVRWDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYM 425
S +D EG+KY DF S + + GH HP + Q L S FY++ + +
Sbjct: 64 SYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLVHSSNLFYNEPAIELSNVI 123
Query: 426 TE-------LFGYDRLLPMNTGVEGGESACKIAR 506
+ G ++ N G E E+A K AR
Sbjct: 124 NNSLAKNSGIAGPTKIFFANCGTEANETALKFAR 157
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 39.9 bits (89), Expect = 2e-04
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTEL 434
+D + DF S + GH HP I ++K L + F S + + +++L
Sbjct: 45 YDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLSPPVVQLATELSDL 104
Query: 435 F--GYDRLLPMNTGVEGGESACKIAR 506
G D+ L ++TG E E+A ++A+
Sbjct: 105 LPDGLDKTLFLSTGGEANEAALRMAK 130
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +3
Query: 258 DVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTELF 437
DV+G +Y DFL+ +A GH +P I +AL + D + + + +L E +
Sbjct: 65 DVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEIGISLGGTTTCELNYAEALKSRFL 124
Query: 438 GYDRLLPMNTGVEGGESACKIAR 506
+++ N+G E +A AR
Sbjct: 125 SIEKIRFCNSGTEANITAIIAAR 147
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 264 EGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSR 383
E Y + + AY +VN G I+E LK++ L +V+R
Sbjct: 1180 EPSTYENMVRAYLSVNDGRKAMEIVEQLKRKRYPLPVVNR 1219
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 273 KYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTELFGYDRL 452
++ D L Y N HP IEAL+K + Y + K +KY+T L GY L
Sbjct: 111 RFKDHLPFYE--NYIRNHPLAIEALQKSTAPRQTGLKLNY---VSKLDKYVTPLDGYSHL 165
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 266 FDIPTNTPSPRHKATGKGA*FLQPYLSSNWKISLDDKFCSAI 141
FDI NT PRH FL +S + S+DDK I
Sbjct: 301 FDIRINTEDPRHSQIRS---FLATMMSQDKIRSIDDKLTELI 339
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 150 FSHNFTKFLRYGTVLLCLRCCFNVTVQHRGVSTSKINQRL 31
FSHN YG LCL + + H GV + +NQ L
Sbjct: 242 FSHN------YGRTALCLSGGASFAIYHTGVLRALLNQDL 275
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 496 LHALSPPSTPVFIGSRRSYPNNSVIYFSYLPS*SE*NALDTSVKLSA 356
L A S PVF+ S+R Y +NS I + S N D + + SA
Sbjct: 40 LRAHSTFKEPVFLLSQRQYSHNSKILTELINSVKRPNKPDQNEEKSA 86
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 56 DTPLCWTVTLKQQRRHNSTVPYRKNFVKLWLNKICHLKKFSSWKTNMVVEITLPCLLLYA 235
D P T+ L+ + R + P++ NF++ + + +L+K + +E T YA
Sbjct: 494 DEPSVQTIQLQGKIRVVPSKPFKLNFLEQIRDNVINLRKMVEQDEQLCIE-TFSKFDFYA 552
Query: 236 EVKECSLGCR 265
++C L R
Sbjct: 553 -TRDCELPLR 561
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +3
Query: 345 LKKQADNLTLVSRAFYSDQLGKYEKYMT 428
+KK +++ TL RAF+++ + + ++Y+T
Sbjct: 210 VKKSSESATL-GRAFFNNSMNRPQRYLT 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,470
Number of Sequences: 5004
Number of extensions: 47818
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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