Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20321
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195... 123 7e-29
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 46 2e-05
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 44 1e-04
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 42 3e-04
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 40 9e-04
07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520 40 0.001
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 31 0.55
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 30 0.96
08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751 29 1.7
06_03_0998 - 26742608-26742802,26743137-26743325,26743600-267436... 28 5.1
01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810... 28 5.1
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 27 6.8
>03_05_0467 -
24615243-24615384,24619166-24619450,24619516-24619596,
24619807-24619904,24620038-24620190,24620705-24620760,
24620844-24621003,24621416-24621646,24621795-24621903,
24622642-24622799
Length = 490
Score = 123 bits (297), Expect = 7e-29
Identities = 53/86 (61%), Positives = 68/86 (79%)
Frame = +3
Query: 258 DVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTELF 437
D EG KY DFLSAYSAVNQGHCHP+++ ALK+QA+ LTL SRAFY+D+ + +Y+T +F
Sbjct: 71 DPEGNKYIDFLSAYSAVNQGHCHPKVLRALKEQAERLTLSSRAFYNDKFPIFAEYLTSMF 130
Query: 438 GYDRLLPMNTGVEGGESACKIARNGG 515
GY+ +LPMNTG EG E+A K+ R G
Sbjct: 131 GYEMMLPMNTGAEGVETAIKLVRKWG 156
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 157 LSSKEIFQLEDKYGCRNYAPLPVALCRGEG 246
L+S+E+ ++E + NY P+PV +GEG
Sbjct: 37 LTSEELMRMERERSAHNYHPIPVVFSKGEG 66
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTEL 434
+D +G++Y D + + GH P + A+ QA L S Y+ K + E
Sbjct: 94 YDADGREYLDMAAGIAVNALGHADPDWVAAVSAQAATLVHASNVQYTVPQVALAKRLVEA 153
Query: 435 FGYDRLLPMNTGVEGGESACKIAR 506
DR+ NTG E E+A K AR
Sbjct: 154 SFADRVFFANTGTEANEAAIKFAR 177
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTEL 434
+D +G++Y D + V GHCHP ++EA+ QA + + + + + + + +
Sbjct: 101 FDEDGRRYLDAFGGIATVCCGHCHPDVVEAMVNQAKRIQHSTVLYLNHAIADFAEALAAK 160
Query: 435 FGYDRLLPM--NTGVEGGESACKIAR 506
D + N+G E E A IAR
Sbjct: 161 MPGDLKVVFFTNSGTEANELALMIAR 186
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKY-EKYMTE 431
+D GK+Y D V+ GHCHP I+ A+ +Q L + + + + ++ E ++
Sbjct: 100 YDENGKRYLDCFGGIVTVSCGHCHPDIVNAVVEQTKLLQHTTTIYLNQPIVEFAEALASK 159
Query: 432 LFGYDRLLP-MNTGVEGGESACKIAR 506
+ G +++ +N+G E E A +AR
Sbjct: 160 MPGNLKVVYFVNSGTEANELAMLMAR 185
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 40.3 bits (90), Expect = 9e-04
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTEL 434
+D G++Y D + + V GHCHP ++ A+ QA L + + + + + + +
Sbjct: 76 FDERGRRYLDAFAGIATVCCGHCHPDVVGAIAAQAGRLQHSTVLYLNHAIADFAEALASK 135
Query: 435 FGYDRLLPM--NTGVEGGESACKIAR 506
D + N+G E E A +AR
Sbjct: 136 MPGDLKVVFFTNSGTEANELAIMMAR 161
>07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520
Length = 448
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKY---- 422
+D +G++Y D + + GH P + A+ QA L S Y+ E+
Sbjct: 98 YDADGREYLDMAAGIAVNALGHADPDWVAAVSAQAATLVHASNVQYTVPQASLERVTPTA 157
Query: 423 ---MTELFGYDRLLPMNTGVEGGESACKIAR 506
+ E DR+ NTG E E+A K AR
Sbjct: 158 HHRLVEASFADRVFFANTGTEANEAAIKFAR 188
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNL 368
+D++GKKY D L+ G PR+++A +Q L
Sbjct: 523 YDIDGKKYLDSLAGLWCTALGGSEPRLVKAATEQLHKL 560
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNL 368
+D+ GKKY D L+ + G PR+I+A Q + L
Sbjct: 134 YDINGKKYIDALAGLWSTALGGNEPRLIKAATDQLNKL 171
>08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751
Length = 478
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +3
Query: 255 WDVEGKKYYDFLSAYSAVNQGHC----HPRIIEALKK 353
WDV+G +Y D++ ++ GH + +IE LKK
Sbjct: 98 WDVDGNEYIDYVGSWGPAIIGHADDTVNAALIETLKK 134
>06_03_0998 -
26742608-26742802,26743137-26743325,26743600-26743657,
26743990-26744056,26744368-26746504
Length = 881
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 143 WLNKICHLKKFSSWKTNMVVEITLPCLLLYAEVKECS 253
WL+ C + F KT + + C L AE EC+
Sbjct: 556 WLDFFCCCRNFKMVKTVVSYHLRFSCFLTLAEKHECT 592
>01_05_0246 +
19880364-19880565,19880721-19880801,19880891-19881054,
19881784-19881835,19882110-19882462
Length = 283
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 114 TVLLCLRCCFNVTVQHRGVSTSKINQRLT-DEMNF 13
T+ ++CC ++H G STS N R T EM F
Sbjct: 72 TITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCF 106
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 86 KQQRRHNSTVPYRKNFVKLWLNKICHLKKFSSWKTNM 196
K+ RH V K+F K +NK CHL F +K M
Sbjct: 20 KRSSRHRGKV---KSFPKDDVNKPCHLTSFVGYKAGM 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,483
Number of Sequences: 37544
Number of extensions: 282508
Number of successful extensions: 681
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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