Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20321
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   2e-32
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.98 
SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  

>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score =  135 bits (326), Expect = 2e-32
 Identities = 56/84 (66%), Positives = 76/84 (90%)
 Frame = +3

Query: 255 WDVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQADNLTLVSRAFYSDQLGKYEKYMTEL 434
           WDV GK+Y DFL+AYSAVNQGHCHPRI++AL+ QA  L+L SRAFY+D LG++++++T+L
Sbjct: 2   WDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEFQEFVTKL 61

Query: 435 FGYDRLLPMNTGVEGGESACKIAR 506
            GYD++LP+N+GVEGGE+ACK+AR
Sbjct: 62  CGYDKVLPVNSGVEGGETACKLAR 85


>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 258 DVEGKKYYDFLSAYSAVNQGHCHPRIIEALKKQ 356
           D + K+Y D++ ++  +  GH HP +++A++ Q
Sbjct: 46  DEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQ 78


>SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 266 FDIPTNTPSPRHKATGKGA*FLQPYLSSNWKISLDDKFCSAII-LRNFYDMVRYYCAC 96
           F I  N+P    + + K    LQ Y  +N+K+ + + +   I  L  +++ VR  CAC
Sbjct: 22  FAIEFNSPEGTGRLSDKQQVMLQNYKENNYKVLVSNDYDEIIEGLVKYFEGVRVQCAC 79


>SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 360 DNLTLVSRAFYSDQLGKYEKYMTELFGYDRLLPMNTGVEGGES 488
           + + L+  +F  DQL +YE Y    F    +  +  GV GG S
Sbjct: 103 EKMQLLVSSFSEDQLNRYEMYRRAAFPKAAIKRLMQGVTGGTS 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,460
Number of Sequences: 59808
Number of extensions: 335201
Number of successful extensions: 834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)