Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20321
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.61 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   1.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 333 IIEALKKQADNLTLVSRAFYSDQLGKYEKYMTELFGYDRLL 455
           +I  L K+A  +  V+   + DQ+G +       +GYDR+L
Sbjct: 46  LIPRLAKKAIQVLGVTEKEFFDQMGVHFVGFVGQYGYDRVL 86


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 246 SVRWDVEGKKYYDFLSAYSAVN 311
           SV WD +G  Y++ LS    +N
Sbjct: 69  SVWWDYKGIVYFELLSPNRTIN 90


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 246 SVRWDVEGKKYYDFLSAYSAVN 311
           SV WD +G  Y++ L     +N
Sbjct: 191 SVWWDYKGIVYFELLPPNRTIN 212


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 420 YMTELFGYDRLLPMNTGVEGGESAC 494
           Y   +  +DRL  ++ G+ G  S C
Sbjct: 126 YRIAIDEWDRLWVLDNGISGETSVC 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,242
Number of Sequences: 438
Number of extensions: 3194
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)