Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20319
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   1.5  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   2.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   2.7  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   3.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   4.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   8.1  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = +3

Query: 285 RECKNQKRLSQNKSQENKELRGYLTEVVEER---RLRKTKIXHEIKALIXATGNRHDDE* 455
           R+ K Q+   QNK +E  ELR  L E  ++    RL   ++  E + L  A  N + +  
Sbjct: 502 RQLKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSN-- 559

Query: 456 RSSDY---VKKLET 488
            SSDY   +K LE+
Sbjct: 560 LSSDYETQIKSLES 573


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 107 ICSKIFNLLCIHTFLMYFIHIYVSVDHI 24
           ICS  +++L  + F++  +H+YV V +I
Sbjct: 101 ICSNSYSILVNYGFILNMVHMYVHVFNI 128


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 298 FLHSLNSIFFNILHMSSLLCPLLFF 224
           F+H L+S + N+L++ S +C  L F
Sbjct: 321 FVHQLSSSYTNLLNLRSAICDWLKF 345


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 294 KNQKRLSQNKSQENKELRGYLTEVVEERR 380
           + Q   + N   E ++L GY++E+V+E R
Sbjct: 16  ETQNDTTDNFDAEMQDLNGYISEIVDEAR 44


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 ISNLIYHEIEMAKSKYNIWDDNFSWKN 201
           ++NL Y  +    S ++I D+NFS+ N
Sbjct: 368 LTNLPYEFVRFNNSMHSIGDNNFSYNN 394


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 294  KNQKRLSQNKSQENKELRGYLTEVVEERRL--RKTKIXHEIK 413
            +++KR +   S++N+ELR   +E+  +R+L     K+  E+K
Sbjct: 1272 EDEKRKALIASRDNEELRSLKSELESKRKLEVEYQKVLEEVK 1313


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 346  RSSLFSWDLFWDNLFWFLHSLNSIFFNILHMSSLLCPLLFFVIK*LDCNF 197
            R  L  WDL + +     +++     N LH   LL PLL  +++ L+ ++
Sbjct: 1322 RVYLLVWDLIFYHFEETTYNIKLSIINQLHAMDLLRPLLNTLVEILNLSY 1371


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 33  YTYVNVNEVHEKSVNT 80
           Y+ V V+E HE+SVNT
Sbjct: 516 YSAVIVDEAHERSVNT 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,028
Number of Sequences: 5004
Number of extensions: 29272
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)