Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20319
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    28   4.6  
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607...    27   6.1  
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    27   8.1  
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    27   8.1  

>03_05_0229 -
           22142255-22142344,22142471-22142527,22142621-22142705,
           22143552-22143677,22143750-22143793,22143877-22143999,
           22144078-22144216,22148795-22151292
          Length = 1053

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 243 RREDI*RMLKKI-ELRECKNQKRLSQNKSQENKELRGYLTEVVEERR 380
           R+ D  R+ K+I E+  C+  +  +Q   +E KEL+ YL  ++ ERR
Sbjct: 148 RQFDAMRITKRIIEVATCEPLE--TQMDHKEEKELQSYLQNILHERR 192


>01_06_0551 +
           30159789-30159946,30160509-30160629,30160714-30160788,
           30160877-30161028,30161103-30161208,30161298-30161363,
           30161623-30161694,30161849-30161932,30162108-30162206,
           30162841-30162888,30162986-30163039,30163137-30163235,
           30163321-30163410,30163503-30163580,30163699-30163773,
           30163866-30163956,30164282-30164410,30164501-30164589
          Length = 561

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 282 LRECKNQKRLSQN-KSQENKELRGYLTEVVEERRLRKTKIXHEIK 413
           LR+ +  K L+ N + +E   LRG L   +  + L++ KI H I+
Sbjct: 58  LRDPRYNKGLAFNERERETHYLRGLLPPAIVSQELQERKIMHNIR 102


>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 376 LSSTTSVRYPRSSLFSWDLFWDNLFWFLHSLNSIFFNILHMSSLLCPLLFF 224
           L+ T  V+  RS   S +LF+  +     S+ S+ + +LH+  L+C   FF
Sbjct: 615 LTGTAVVQDGRSDTISQELFYAKI-----SIISVGYLLLHLPELMCMCWFF 660


>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 115 KKISNLIYHEIEMAKSKYNIWDDN 186
           K++  + YH ++ AK K++ WDD+
Sbjct: 97  KRVYCMEYHFMKSAKGKHSYWDDD 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,271,855
Number of Sequences: 37544
Number of extensions: 141279
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)