Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20319
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007) 30 1.2
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 29 2.1
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 29 2.7
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59583| Best HMM Match : CSE2 (HMM E-Value=5.4) 28 3.6
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_17055| Best HMM Match : DUF149 (HMM E-Value=2.7) 27 8.3
SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)
Length = 881
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 225 KKSKGQRREDI*RMLKKIEL-RECKNQKRLSQNKSQENKELRGYLTEVVEERRLRKTKIX 401
++++ + RE++ R +K++ RE K KR + + EN++ R L E+ +E+ L
Sbjct: 641 ERNRQKHREEMERKREKLQKERELKKAKR--EKERDENEKARKTLLELAKEQALEIVVPE 698
Query: 402 HEI 410
HE+
Sbjct: 699 HEV 701
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/68 (25%), Positives = 39/68 (57%)
Frame = +3
Query: 195 EKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVVEE 374
++L++SH+ TKK + R+++ +LK+ + +N K ++ E ++ +L E+ E
Sbjct: 2479 DELRASHMSTKKENDKLRQEV-SVLKQ-NFGQLQNDK---EDLEIERDRVKRHLAELTAE 2533
Query: 375 RRLRKTKI 398
+ KT++
Sbjct: 2534 KNTLKTRL 2541
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +3
Query: 192 LEKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVVE 371
+EKL + + S Q+ + + KK+E ++ K ++ +++ ++ KEL+ TE V+
Sbjct: 4282 MEKLDADRSRQQSSLQQKLAE--KRRKKLEAQKRKQEREMTREVMEQKKELQDIRTEHVK 4339
Query: 372 E 374
E
Sbjct: 4340 E 4340
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 327 QENKELRGYLTEVVEERRLRKTKI 398
+ENK+L+G++ + EER++ + K+
Sbjct: 327 EENKKLKGHIHHIAEERQIDQAKV 350
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 210 SHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVVEERRLRK 389
S + ++SK + ++D + ++ EL+ K + + K +E +E + EE R R+
Sbjct: 975 SEVDAEESKKREKKDKEKEKRERELQRKKERDEQKRKKEEEKREREEKKRK--EEERKRR 1032
Query: 390 TKIXHEIKALIXATGN 437
K E+K + GN
Sbjct: 1033 EKADKELKKIHKLKGN 1048
>SB_59583| Best HMM Match : CSE2 (HMM E-Value=5.4)
Length = 175
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/69 (21%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 195 EKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVV-- 368
E+++ + + +++K Q + R + + + + C+N+KR+S+NK Q ++ + + +
Sbjct: 76 ERIRRNKKLIRRNKKQICRNK-RRISRNKKQICRNKKRISRNKKQISRNKKQIRRKQISR 134
Query: 369 EERRLRKTK 395
++R+R+ K
Sbjct: 135 SKKRIRRNK 143
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 192 LEKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYL-TEVV 368
+EKL ++ +K++K Q+R I KKI + K Q+RL++ + QE + + +
Sbjct: 621 MEKLMAAEE-SKRAK-QQRVRIRAQQKKIAKEQEKQQRRLAKMRRQEQLRIEKEMRAQQA 678
Query: 369 EERRLRK 389
+E R RK
Sbjct: 679 QEARRRK 685
>SB_17055| Best HMM Match : DUF149 (HMM E-Value=2.7)
Length = 328
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 273 KIELRECKNQKRLSQNKSQENKELRGYLTEVVE-ERRLRKT 392
K +L ECK LSQN S +N + YLT + E+ +T
Sbjct: 192 KKDLNECKPSTNLSQNGSYKNVDF--YLTATTDIEKNFNET 230
>SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 373 SSTTSVRYPRSSLFSWDLFWDNLFWFLHSLNSIFFNI 263
S V PRS W L N W L S NS+F N+
Sbjct: 661 SGALIVANPRSDAIVWSL--KNEQWVLDSFNSVFQNL 695
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,299
Number of Sequences: 59808
Number of extensions: 183076
Number of successful extensions: 506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -