Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20319
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   2.4  
U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    28   3.2  
AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical ...    28   4.2  
AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b prote...    27   5.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z73908-3|CAC42305.1|  184|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z49909-9|CAE54884.1|  143|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z49909-8|CAA90111.1|  204|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U46753-12|AAM98047.2|  539|Caenorhabditis elegans Dishevelled re...    27   7.3  
U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fus...    27   7.3  
EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell f...    27   7.3  
U80447-2|AAO38637.1|  579|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical pr...    27   9.7  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    27   9.7  
AL032636-4|CAA21606.1|  123|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 267 LKKIELRECKNQKRLSQNKSQENKELRGYLTEVVEERRLRKTKIXHEIKALI 422
           L+KIE +  +   +LSQ +S+EN +      E +E  R +      E+   I
Sbjct: 576 LEKIETKHLRKSLKLSQQESEENSQKISEKNEEIEHLRAQVQTTQQELNETI 627


>AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical
           protein M151.4 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/79 (22%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
 Frame = +3

Query: 192 LEKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLT---E 362
           L+K  SS ++ K ++     D  ++ KK++ ++ +++KR+ Q   +E ++L+G L     
Sbjct: 251 LKKSVSSEIV-KATEAAHATD--QLRKKLQKQQDEHEKRVEQEHKKEIEDLKGALAAEKR 307

Query: 363 VVEERRLRKTKIXHEIKAL 419
           + E  ++   K+  E++++
Sbjct: 308 ISEADKVELKKLTEELQSM 326


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +3

Query: 237 GQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVVEERRLRKTKIXHEIKA 416
           GQ++E +   +++I+LR  K ++    N+S +N  LR  +  V+      KTKI  E K+
Sbjct: 449 GQQKETVEERMERIKLRIAKRKEVAQANRSTDN--LRSPVICVLGHVDTGKTKISAEQKS 506


>U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical
           protein C06E4.8 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +3

Query: 327 QENKELRGYLTEVVEERRLRKTKI 398
           +EN ++ G+LTE+++ R + K+KI
Sbjct: 135 EENGDMYGHLTEIIKNRMMVKSKI 158


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 288 ECKNQKRLSQNKSQENKELRGYLTEVVEERRLRKTKIXHEIKALIXATGN 437
           E +NQ   + NKS  +K+++ +L  V  ER+L  ++I  E  A++    N
Sbjct: 804 EERNQYLKNLNKSDRDKDIQNHLEIVTRERKL--SRINEEAPAVVPEQRN 851


>AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical
           protein Y43F8A.4 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 331 SWDLFWDNLFWFLHSLNSIFFNILHMSSLL 242
           +W +F  NL  F+ S   +FFNILH+  LL
Sbjct: 28  NWAVFCSNLQIFM-SFFGVFFNILHIFILL 56


>AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b protein
           protein 52 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 397 IFVFLNLLSSTTSVRYPRSSLFSWDLFWDNLFWFLHSLN 281
           +F F ++  S +S R  RS LFS    +D   WF H ++
Sbjct: 72  MFAFGHVTLSVSSRRSRRSRLFSTPRLFDTRSWFNHLMD 110


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 279 ELRECKNQKRLSQNKSQENKELRGYLTEVVEERRLRKTKIXHEIKA 416
           +LR+ K ++ L + + + N+ELR  + +   ERR R+ +  H  KA
Sbjct: 629 KLRKQKEERDLEERR-ERNRELREAMRQDEMERRKREEESRHRRKA 673


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 246 REDI*RMLKKIELRECKNQKRLSQNKS---QENKELRGYLTEVVEERRLRKTKIXHEIK 413
           RE++ +   K +L E + +K + + +    Q+N+E    + E  E+R   K K   EIK
Sbjct: 197 REELQQQRHKQQLEEYEKRKEILRREEEIKQQNQEREKQINEDFEKRNQEKLKREEEIK 255


>Z73908-3|CAC42305.1|  184|Caenorhabditis elegans Hypothetical
           protein F53B2.8 protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +3

Query: 192 LEKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVVE 371
           LEKL+   L     + +  +   +  KK+E +  K QK+L   +S + K  +G   +  +
Sbjct: 82  LEKLEKLELQLTLKRSREEQKRAKKDKKLERKALKIQKKLEALRSIKEKPHQGSEAQGPK 141

Query: 372 ERRLRKTKI 398
             R RK ++
Sbjct: 142 VPRARKIRV 150


>Z49909-9|CAE54884.1|  143|Caenorhabditis elegans Hypothetical
           protein C14A4.7b protein.
          Length = 143

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 385 LNLLSSTTSVRYPRSSLFSWDLFW 314
           L L+ S T + YP+ + F W  FW
Sbjct: 70  LGLVLSFTDLHYPKEAKFFWISFW 93


>Z49909-8|CAA90111.1|  204|Caenorhabditis elegans Hypothetical
           protein C14A4.7a protein.
          Length = 204

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 385 LNLLSSTTSVRYPRSSLFSWDLFW 314
           L L+ S T + YP+ + F W  FW
Sbjct: 70  LGLVLSFTDLHYPKEAKFFWISFW 93


>U46753-12|AAM98047.2|  539|Caenorhabditis elegans Dishevelled
           related protein 1,isoform a protein.
          Length = 539

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 331 SWDLFWDNLFWFL 293
           SWDL W N FW +
Sbjct: 510 SWDLIWSNGFWIM 522


>U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fusion
           failure protein1 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 261 RMLKKIELRECKNQKRLSQNKSQENKELRG-YLTEVVEERRLRKTKIXHEIK 413
           R   K+ ++ CK Q  + Q    +N  LRG    +   ERR+        +K
Sbjct: 302 RNAHKVVIKNCKGQVHMDQFSGTKNFVLRGTQYNDTYNERRVSDNNFVRSVK 353


>EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell
           fusion failure-1 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 261 RMLKKIELRECKNQKRLSQNKSQENKELRG-YLTEVVEERRLRKTKIXHEIK 413
           R   K+ ++ CK Q  + Q    +N  LRG    +   ERR+        +K
Sbjct: 302 RNAHKVVIKNCKGQVHMDQFSGTKNFVLRGTQYNDTYNERRVSDNNFVRSVK 353


>U80447-2|AAO38637.1|  579|Caenorhabditis elegans Hypothetical
           protein F55F8.2b protein.
          Length = 579

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 195 EKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQE 332
           +K+  +    +KS+   RED    +KK      KN++RL++ K +E
Sbjct: 522 QKIDETKEWKRKSRKATREDEMNSMKKSLKSSQKNKERLAEKKKKE 567


>U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical
           protein F55F8.2a protein.
          Length = 746

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 195 EKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQE 332
           +K+  +    +KS+   RED    +KK      KN++RL++ K +E
Sbjct: 689 QKIDETKEWKRKSRKATREDEMNSMKKSLKSSQKNKERLAEKKKKE 734


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 237 GQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVVEERRLRKTKIXHEIK 413
           GQ++E +   +++I+LR  K ++    N+S +N  LR  +  V+      KTK+   I+
Sbjct: 449 GQQKETVEERMERIKLRIAKRKEVAQANRSTDN--LRSPVICVLGHVDTGKTKMLDTIR 505


>AL032636-4|CAA21606.1|  123|Caenorhabditis elegans Hypothetical
           protein Y40B1B.7 protein.
          Length = 123

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +3

Query: 216 LITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQ-ENKELRGYLTEVVEERRLRKT 392
           L  KK   +R +D  R  K+++ R+ K ++++ Q K + EN+     + ++ +  +L+KT
Sbjct: 47  LKAKKDMVKRVQDNIRE-KQVQERQEKKERKVEQEKRRLENERKAEIVQKITKIHKLKKT 105

Query: 393 K 395
           K
Sbjct: 106 K 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,320
Number of Sequences: 27780
Number of extensions: 156455
Number of successful extensions: 519
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)