Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20319
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.57 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.57 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   3.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 160 TSPFQFHDKLNSKFFSTIFVQKSLTY 83
           T+ F ++  +NS F+STI     +T+
Sbjct: 284 TAEFDWNKPINSGFYSTIMYSNGVTF 309


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 160 TSPFQFHDKLNSKFFSTIFVQKSLTY 83
           T+ F ++  +NS F+STI     +T+
Sbjct: 284 TAEFDWNKPINSGFYSTIMYSNGVTF 309


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -3

Query: 277 IFFNILHMSS 248
           I FNILHMSS
Sbjct: 33  ILFNILHMSS 42


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 181 HPIYYISTSPF 149
           H +YY++T+PF
Sbjct: 271 HGLYYVNTAPF 281


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 285 RECKNQKRLSQNKSQENKELRGYLTEVVEERRLRK 389
           R C   +     K +  ++L     +++EER  RK
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRK 36


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 285 RECKNQKRLSQNKSQENKELRGYLTEVVEERRLRK 389
           R C   +     K +  ++L     +++EER  RK
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRK 36


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 283  NSIFFNILHMSSLLCPLLFFVIK 215
            NSI  ++   S   CP+++FV++
Sbjct: 1475 NSITLHLNAWSDGGCPMIYFVVE 1497


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 119 KFRI*FIMKLKWRSRNIIY 175
           K  +  +MK+KW   +IIY
Sbjct: 269 KAMVEIVMKMKWSYVSIIY 287


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 369 EERRLRKTKIXHEIKALIXATGNRHDDE 452
           EERRLR  +I  E+     A G    DE
Sbjct: 178 EERRLRPDEIKVEVGEDEFANGGAARDE 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,516
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)