Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20319
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ...    32   0.24 
At1g67230.1 68414.m07652 expressed protein                             31   0.42 
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    29   1.3  
At5g07890.1 68418.m00910 myosin heavy chain-related contains wea...    29   2.2  
At5g24130.1 68418.m02837 expressed protein                             28   3.9  
At1g53380.1 68414.m06051 expressed protein contains Pfam profile...    28   3.9  
At5g40670.1 68418.m04937 PQ-loop repeat family protein / transme...    27   6.8  
At2g35060.1 68415.m04301 potassium transporter family protein si...    27   9.0  
At1g31120.1 68414.m03808 potassium transporter family protein si...    27   9.0  

>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain);
          Length = 211

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +3

Query: 210 SHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQN-KSQENKELRGYLTEVVEER--- 377
           +H I +  +G ++E +  M+KKIE+ E  N+K + Q+  S   KEL    T++ +     
Sbjct: 81  THPIEQYVQGLKKEMV-TMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMV 139

Query: 378 RLRKTKIXHEIKALIXATGNRHDDE 452
           RLRK K+  +    + A      DE
Sbjct: 140 RLRKAKLYEDELQKLKAKERELKDE 164


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 273 KIELRECKNQKRLSQNKSQENKELRGYLTEVVEERRLRKTKIXHEIK 413
           K ++ +C++Q+ L Q ++++ K  R    +  EE   RK KI +E+K
Sbjct: 494 KEQIEKCRSQQELLQKEAEDLKAQRESFEKEWEELDERKAKIGNELK 540


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/67 (23%), Positives = 35/67 (52%)
 Frame = +3

Query: 195 EKLQSSHLITKKSKGQRREDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLTEVVEE 374
           +KL    ++ + +K +   +  + +KK +    K QKR  + +++  K+L+      + E
Sbjct: 281 QKLLQKAIVDENNKEKEETESRKRIKKQQDESEKEQKRREKEQAELKKQLQVQKQASIME 340

Query: 375 RRLRKTK 395
           R L+K+K
Sbjct: 341 RFLKKSK 347


>At5g07890.1 68418.m00910 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, cardiac muscle alpha
           isoform (MyHC-alpha) (Alpha isomyosin) (Fragment)
           (Swiss-Prot:P04460) [Oryctolagus cuniculus]
          Length = 409

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +3

Query: 192 LEKLQSSHLITK-KSKGQR---REDI*RMLKKIELRECKNQKRLSQNKSQENKELRGYLT 359
           LE  Q+ +LI K +  G++    ED+ + LK+   +E    K  +++ +QE  ELR  +T
Sbjct: 304 LELSQNVNLIDKVEGMGKQIHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMT 363

Query: 360 EVVEERRLRKTKI 398
            +++E R R+  I
Sbjct: 364 CLLDEERNRRVCI 376


>At5g24130.1 68418.m02837 expressed protein 
          Length = 316

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 312 SQNKSQENKELRGYLTEVVEERRLRKTKIXHE 407
           +Q++  E +E  GYL  V EE R+RK +  HE
Sbjct: 248 AQDRLLEGRE--GYLPLVAEEERIRKMEADHE 277


>At1g53380.1 68414.m06051 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 453

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 463 EDRYSSSCRXP-VAXINAFIS*XIFVFLNLLSSTTSVRYPRSSLFSWDLFWDNLFWFLHS 287
           + R++  CR   +  I+  +    F  L+L +  ++  +P +SLFS  L      W LH 
Sbjct: 323 KSRFARFCRAKYLQLIHPKMEQAFFGHLHLRNQVSAGEFPETSLFSGFLEMAKRIWLLHC 382

Query: 286 L 284
           L
Sbjct: 383 L 383


>At5g40670.1 68418.m04937 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|O60931
           Cystinosin {Homo sapiens}; contains Pfam profile
           PF04193: PQ loop repeat
          Length = 270

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 331 SWDLFWDNLFWFLHSLNSIFFNILHM 254
           SW  F+ N+   L SL SIFF+IL M
Sbjct: 211 SWKNFYGNMGKTLLSLISIFFDILFM 236


>At2g35060.1 68415.m04301 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter HAK2p [Mesembryanthemum crystallinum]
           gi|14091471|gb|AAK53759; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 792

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 92  RFLNKYSRKKFRI*FIMKLKWRSRNIIYG 178
           R  N Y  KKF    +++L ++S  ++YG
Sbjct: 42  RLRNMYREKKFSALLLLQLSFQSLGVVYG 70


>At1g31120.1 68414.m03808 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 796

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 92  RFLNKYSRKKFRI*FIMKLKWRSRNIIYG 178
           R  N Y  KKF    +++L ++S  ++YG
Sbjct: 41  RLRNMYREKKFSAFLLLQLSFQSLGVVYG 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,209,013
Number of Sequences: 28952
Number of extensions: 135639
Number of successful extensions: 401
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)