Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20318
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   2.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.1  
SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.1  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.7  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.7  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    24   8.9  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    24   8.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    24   8.9  

>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 323 PEHITLRRLPPGLNIPSPFGIP 258
           PE      LPP + +P PF IP
Sbjct: 359 PEGTMTNLLPPNMEMPQPFEIP 380


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 208  WCYLERVLASVKSLSYP 158
            W YL R+L SV SLS P
Sbjct: 1978 WWYLYRMLPSVASLSLP 1994


>SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 11  LDLDIGQEVNDDDLERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAWIAEAFNTSQY 190
           L +D+  +V++  LER  R   + S++TD  T + Q +G     G+     A     S++
Sbjct: 4   LAIDLDFDVSESKLERNKRLKQKVSIETDGWTPRVQCFGHLSKNGVVLGEEAYILEQSKF 63

Query: 191 TFE 199
             E
Sbjct: 64  AAE 66


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 262 FRTIENIVQNFELY*GEDWCYLERVLASVKSLSYPSA 152
           F+T+EN+ ++FE Y   +  +L+ +      LS PSA
Sbjct: 28  FQTVENVGKSFEKY---ETSFLKSLFNGNLGLSLPSA 61


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 51  WSGVLDKSYSTASKQIRQRSK 113
           WS  LDK Y T  K++++  K
Sbjct: 285 WSFFLDKRYETRIKKLKEEQK 305


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 258 EQLRILFKTLSSIRVKTGATSNVYWL 181
           E L ++F   + I+V  GAT ++ WL
Sbjct: 280 EALNVVFTNPNIIKVFHGATMDIIWL 305


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 65  RQVLQYSVKTDKATFKNQ--XYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIELK 232
           R +L +SVK+DK T+ +    YG   P         +  NT+ Y  ++    T  EL+
Sbjct: 140 RSILVHSVKSDKNTYLSSPGFYGTPQPLN----QFTDPNNTAVYVHQLPENITTQELR 193


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 199 GSTSLHPNRAQSFEQYSQLFGIPNGDGIFSPG 294
           G+TS   N +    +YS LF I N   +F  G
Sbjct: 43  GATSSLSNSSLGLPEYSNLFAINNLKSLFVAG 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,922
Number of Sequences: 5004
Number of extensions: 31065
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)