Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20318
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0275 + 2249794-2251338                                           29   1.2  
07_01_0709 + 5346074-5346377,5347820-5347918,5348179-5348265,534...    27   5.0  
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429...    27   5.0  
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    27   6.6  
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    27   8.7  

>08_01_0275 + 2249794-2251338
          Length = 514

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
 Frame = +2

Query: 146 LAGAWIAEAFNTSQYTFEVAPVFTLIELKVLN---NILNCSES---------QTXTVYLV 289
           +AG  IA A NT  +T++ +P  T +E+  L+    +LN   S          T    ++
Sbjct: 113 IAGDLIASAMNTVGFTWQASPAATEMEVLALDWLAQMLNLPTSFMNRTGEGRGTGGGVIL 172

Query: 290 LXVAASMLYALVAARFKAFPEVKRKGMRNLPEMAIFTS 403
              + +ML  LVAAR  A       G+  L  +A++ +
Sbjct: 173 GTTSEAMLVTLVAARDAALRRSGSDGVAGLHRLAVYAA 210


>07_01_0709 +
           5346074-5346377,5347820-5347918,5348179-5348265,
           5349012-5349038,5349847-5350013
          Length = 227

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 208 SLHPNR--AQSFEQYSQLFGIPNGDGIFSPGGSRLNVICSG 324
           +L PN   AQ FEQ+++      G    SPGGS  N I  G
Sbjct: 105 NLPPNSKDAQIFEQFAKQQAAMQGSPSASPGGSAANQISFG 145


>02_03_0084 -
           15041261-15041437,15041625-15041765,15042857-15042946,
           15043111-15043201,15043953-15044155,15045361-15045438,
           15045535-15045651,15046111-15046161,15046405-15046500,
           15046726-15046742,15046938-15047064,15050585-15050681,
           15051565-15051638,15051910-15051993,15052099-15052290,
           15054191-15054319,15055607-15055639,15055747-15055843,
           15055940-15055990,15057494-15057564,15058305-15058455,
           15058625-15058703,15059265-15059346,15060335-15060335,
           15060565-15060620,15060969-15061018,15061511-15061580
          Length = 834

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 26  GQEVNDDDLERCVRQVLQYSVKTDKATFKNQXYGC 130
           G E+++ DL++ V+ + QYS + +K +   + Y C
Sbjct: 409 GGEISNRDLQKMVQALPQYSDQIEKLSLHVEAYHC 443


>04_04_0706 +
           27419215-27419371,27419521-27419734,27419818-27419913,
           27420006-27420123,27420211-27420384,27420633-27420803,
           27420932-27420987,27421125-27421214,27421296-27421444,
           27421640-27421722,27421830-27421958,27422063-27422137,
           27422248-27422416,27422965-27423104,27423191-27423298,
           27423603-27423783,27424445-27424542,27424639-27424728,
           27424881-27425034,27425376-27425431,27425483-27425533,
           27425651-27425732,27425821-27425995,27426748-27426823,
           27426951-27427121,27427198-27427269,27427350-27427454,
           27427948-27428037,27428703-27428908,27428989-27429190,
           27429294-27429473,27429858-27429925,27430005-27430341,
           27430428-27430637,27430765-27431448,27431537-27431940,
           27432495-27432542,27432777-27433023,27433381-27433602,
           27433796-27434026
          Length = 2122

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 23  IGQEVNDDDLERCVRQVLQYSVKTD 97
           +G E+N D LE+C+ +++++    D
Sbjct: 733 VGDEINIDKLEKCITELVKHVFNND 757


>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 169 GF*H*PIH-VRGSTSLHPNRAQSFEQYSQ-LFGIPNGDGIFSPGGS 300
           GF H  +H + GS ++ PN   SF Q +  + G+P+  G+  PGGS
Sbjct: 38  GFHHSGLHNMHGSLNM-PNMPGSFSQRNAAMSGLPSS-GVQQPGGS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,299,758
Number of Sequences: 37544
Number of extensions: 215473
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)