Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20318
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_52928| Best HMM Match : PKD (HMM E-Value=0)                         27   6.8  
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     27   8.9  

>SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 297 TXRT-KYTVXVWDSEQLRILFKTLSSIRVKTGATSNVYWLVLKASAIQAPASPY 139
           T RT KY      S   R     L + RV TG+  ++Y+L L+++ IQ  A  +
Sbjct: 262 TVRTLKYFKLTGTSVLWRTFVAYLRAFRVHTGSNKSLYFLFLQSTIIQKLAKRF 315


>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
          Length = 1624

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -2

Query: 288  TKYTVXVWDSEQLRILFKTLSSIRVKTGATSNVY-W---LVLKASAIQAPASPYGSVQPY 121
            +K  V + +SEQ  I   T +   V  G T+  + W   LVL AS    PA P   V  +
Sbjct: 998  SKEGVRLENSEQKYIKISTPAVKAVIAGGTAISHGWQSKLVLDASGSHDPAYPSNDVLSF 1057

Query: 120  XWFLNVALSVL 88
             W+     +V+
Sbjct: 1058 AWYCTQVTNVI 1068


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 384 SGKFLMPFLLTSGKALNLAATRAYNIEAATXRTKYTVXVWD 262
           SGK  +   L S   L++  T+ +NI++   +  + + VWD
Sbjct: 28  SGKTTILKSLASEDVLHITPTQGFNIKSVQSKGGFRLNVWD 68


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 50   LERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAW 160
            L  C ++V   S   +  +F N  YG    YG  GA+
Sbjct: 1103 LAECDKEVQMTSSSREAGSFSNVAYGSNGAYGSNGAY 1139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,394
Number of Sequences: 59808
Number of extensions: 232293
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)