Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20318
         (439 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   3.6  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   6.3  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    22   8.3  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 293 PGLNIPSPFGIP 258
           P ++IP+PFGIP
Sbjct: 432 PIIDIPAPFGIP 443


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 57  RSRSSSFTSWPMSK 16
           RSRS+  TSWP S+
Sbjct: 279 RSRSTRPTSWPRSR 292


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -2

Query: 159 QAPASPYGSVQPYXWFLNVALSV-LTLYCKTCLTHR 55
           Q P  PY   QPY    +VA S  L      C  HR
Sbjct: 375 QPPPPPYQPPQPYSLMASVAPSYGLPQQQNQCPIHR 410


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 432,428
Number of Sequences: 2352
Number of extensions: 7960
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)