Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20318
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-21|CAD45606.2|  433|Caenorhabditis elegans Hypothetical...    67   5e-12
AL032626-20|CAD45605.1|  445|Caenorhabditis elegans Hypothetical...    66   8e-12
AL032626-19|CAA21537.1|  508|Caenorhabditis elegans Hypothetical...    66   8e-12
AF109378-1|AAD19958.1|  508|Caenorhabditis elegans glutamic acid...    66   8e-12
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone...    27   7.9  
AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear recep...    27   7.9  
Z81052-4|CAB02870.1|  328|Caenorhabditis elegans Hypothetical pr...    23   9.1  

>AL032626-21|CAD45606.2|  433|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23c protein.
          Length = 433

 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = +2

Query: 50  LERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIEL 229
           L +    VL+  V+T    F NQ     D   +AG W+    NT+ +T+E+APVF L+E 
Sbjct: 8   LRKSCEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEK 67

Query: 230 KVLNNILNCS--ESQTXTVYLVLXVAASMLYALVAARFKAFPEVKRKGMRNLPEMAIFTS 403
            V+  +      + +          A + LYA+ AAR + +P  K  GM+++P +  FTS
Sbjct: 68  SVMARMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSKHLGMKDIPTLCCFTS 127


>AL032626-20|CAD45605.1|  445|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23b protein.
          Length = 445

 Score = 66.5 bits (155), Expect = 8e-12
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = +2

Query: 50  LERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIEL 229
           L +    VL+  V+T    F NQ     D   +AG W+    NT+ +T+E+APVF L+E 
Sbjct: 83  LVKSCEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEK 142

Query: 230 KVLNNILNCS--ESQTXTVYLVLXVAASMLYALVAARFKAFPEVKRKGMRNLPEMAIFTS 403
            V+  +      + +          A + LYA+ AAR + +P  K  GM+++P +  FTS
Sbjct: 143 SVMARMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSKHLGMKDIPTLCCFTS 202


>AL032626-19|CAA21537.1|  508|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23a protein.
          Length = 508

 Score = 66.5 bits (155), Expect = 8e-12
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = +2

Query: 50  LERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIEL 229
           L +    VL+  V+T    F NQ     D   +AG W+    NT+ +T+E+APVF L+E 
Sbjct: 83  LVKSCEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEK 142

Query: 230 KVLNNILNCS--ESQTXTVYLVLXVAASMLYALVAARFKAFPEVKRKGMRNLPEMAIFTS 403
            V+  +      + +          A + LYA+ AAR + +P  K  GM+++P +  FTS
Sbjct: 143 SVMARMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSKHLGMKDIPTLCCFTS 202


>AF109378-1|AAD19958.1|  508|Caenorhabditis elegans glutamic acid
           decarboxylase protein.
          Length = 508

 Score = 66.5 bits (155), Expect = 8e-12
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = +2

Query: 50  LERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIEL 229
           L +    VL+  V+T    F NQ     D   +AG W+    NT+ +T+E+APVF L+E 
Sbjct: 83  LVKSCEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEK 142

Query: 230 KVLNNILNCS--ESQTXTVYLVLXVAASMLYALVAARFKAFPEVKRKGMRNLPEMAIFTS 403
            V+  +      + +          A + LYA+ AAR + +P  K  GM+++P +  FTS
Sbjct: 143 SVMARMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSKHLGMKDIPTLCCFTS 202


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 123 YXWFLNVALSVLTLYCKTCLTHRSRSSSFTSWPMS 19
           Y W     LS L ++C+ C+  R   S F  W ++
Sbjct: 18  YNWTTTTHLSSLIVFCQPCMVGRCSFSGFWHWHLT 52


>U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 16 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +2

Query: 32  EVNDDDLERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAWIAEAFNTSQYTFEVAPV 211
           ++  D +  C       S+   K  F N     T  + + G +++   NT ++   V P 
Sbjct: 182 KLTSDWVSWCFEDFKNLSIDQKKILFHNAY---TPYFMMEGGFLSHIRNTPEHL--VMPS 236

Query: 212 FTLIELKVLNNILNCSES 265
              I+   LN+  NCSES
Sbjct: 237 GDYIDTLDLNSFYNCSES 254


>AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-16 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +2

Query: 32  EVNDDDLERCVRQVLQYSVKTDKATFKNQXYGCTDPYGLAGAWIAEAFNTSQYTFEVAPV 211
           ++  D +  C       S+   K  F N     T  + + G +++   NT ++   V P 
Sbjct: 182 KLTSDWVSWCFEDFKNLSIDQKKILFHNAY---TPYFMMEGGFLSHIRNTPEHL--VMPS 236

Query: 212 FTLIELKVLNNILNCSES 265
              I+   LN+  NCSES
Sbjct: 237 GDYIDTLDLNSFYNCSES 254


>Z81052-4|CAB02870.1|  328|Caenorhabditis elegans Hypothetical
           protein D2023.5 protein.
          Length = 328

 Score = 22.6 bits (46), Expect(2) = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 223 RAQSFEQYSQLFGIPN 270
           RA  FE+Y+Q+ G+ N
Sbjct: 95  RADLFEEYAQMVGLNN 110



 Score = 22.2 bits (45), Expect(2) = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 187 IHVRGSTSLHPNRAQSFEQY 246
           +HV    + +P+R Q F+QY
Sbjct: 75  VHVDLDIATYPSRYQRFQQY 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,431,929
Number of Sequences: 27780
Number of extensions: 177982
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)