Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20318
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.21 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.84 
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   2.6  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   2.6  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   4.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 117 WFLNVALSVLTLYCKTCLTHRS 52
           W     ++++T YCKTC++ R+
Sbjct: 285 WVPFFCVNIVTSYCKTCISGRA 306


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 62  VRQVLQYSVKTDKATFKNQXYGCTDPYGLAG 154
           +R   +Y V+TD   F N      D Y +AG
Sbjct: 421 LRMARKYDVQTDSIIFANNQPYTKDSYTVAG 451



 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 171 ASAIQAPASPYGSVQP 124
           +S I  P SPYG V+P
Sbjct: 315 SSGILTPVSPYGYVKP 330


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 414 GCLQEVKMAISGKFLMPFLLTSGKALNLAATRAYNIEAA 298
           G  Q+  +A   ++LMP ++     L+++   A NI+AA
Sbjct: 19  GIDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAA 57


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 414 GCLQEVKMAISGKFLMPFLLTSGKALNLAATRAYNIEAA 298
           G  Q+  +A   ++LMP ++     L+++   A NI+AA
Sbjct: 19  GIDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAA 57


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 62  VRQVLQYSVKTDKATFKNQXYGCTDPYG 145
           V +V+   V T   + K    GC  PYG
Sbjct: 1   VEKVVMPYVSTMPKSLKEPCDGCAAPYG 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,924
Number of Sequences: 438
Number of extensions: 2433
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)