Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20318
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24290.2 68417.m03488 expressed protein                             28   3.2  
At5g23350.1 68418.m02731 GRAM domain-containing protein / ABA-re...    27   5.5  
At3g47940.1 68416.m05227 DNAJ heat shock protein, putative simil...    27   5.5  
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    27   5.5  
At1g54740.1 68414.m06242 expressed protein                             27   7.3  
At1g23300.1 68414.m02914 MATE efflux family protein similar to r...    26   9.7  
At1g17250.1 68414.m02101 leucine-rich repeat family protein cont...    26   9.7  

>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 41  DDDLERCVRQVLQYSVKTDKATFKNQXYGCTDP 139
           +DDL R +RQ        +K  +KN  + CT+P
Sbjct: 416 EDDLNRSIRQESHDRRYYEKVNWKNYSHVCTEP 448


>At5g23350.1 68418.m02731 GRAM domain-containing protein /
           ABA-responsive protein-related contains similarity to
           ABA-responsive protein in barley (GI:4103635) [Hordeum
           vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam
           PF02893: GRAM domain
          Length = 280

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = +2

Query: 188 YTFEVAPVFTLIELKVLNNILNCSESQTXTVYLVLXVAASMLYALVAARFKAFPEVKRKG 367
           + F+  P +T+    + +N L+ S S T +   +   ++ M  + V  +  AFP  K   
Sbjct: 24  FPFKYLPTYTVSSSTITHN-LSLSFSFTKSRIKITTQSSKMTLSRVHQQVIAFPAAKTDT 82

Query: 368 MRNLPEMAIFTS*RQPLLNQKS 433
           M  LP+ A   + + P  ++ S
Sbjct: 83  MSYLPDPASINNHQIPTSSKVS 104


>At3g47940.1 68416.m05227 DNAJ heat shock protein, putative similar
           to SP|O89114 DnaJ homolog subfamily B member 5 (Heat
           shock protein Hsp40-3) {Mus musculus}; contains Pfam
           profile PF00226: DnaJ domain
          Length = 350

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 178 H*PIHVRGSTSLHPNRAQSFEQYSQLFGIPNGDGIFSPGG 297
           H P H   ++S   N   + + Y++ FG  NG G  + GG
Sbjct: 105 HRPQHPPNASSFRFNPRDAEDIYAEFFGSENGGGSNNAGG 144


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 20  DIGQEVNDDDLERCVRQVLQYS---VKTDKATFKNQXYG 127
           D+G EVNDD L +   +   ++   V  DK T K + YG
Sbjct: 143 DLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYG 181


>At1g54740.1 68414.m06242 expressed protein
          Length = 280

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 14  DLDIGQEVNDDDLERCVRQVLQYSVKTD 97
           DL+ G+E+N+DD +    Q +  S+ +D
Sbjct: 165 DLECGREINEDDNDGACNQGMDLSIISD 192


>At1g23300.1 68414.m02914 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 515

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -2

Query: 363 FLLTSGKALNLAATRAYNIEAATXRTKYTVXVWDSEQLRILFKTLSSIRVKTGATSNV 190
           FLL      +++     ++     R KY     D E++R+L K L+ +   T   +N+
Sbjct: 345 FLLIVAMITSVSIGIVISVTLIVLRDKYPAMFSDDEEVRVLVKQLTPLLALTIVINNI 402


>At1g17250.1 68414.m02101 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 756

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 217 PNRAQSFEQYSQLFGIPNG 273
           PN   + +QY+QLF +P G
Sbjct: 571 PNNVTTHQQYNQLFSLPPG 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,015,792
Number of Sequences: 28952
Number of extensions: 169677
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)