Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20314
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    64   1e-11
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    56   3e-09
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   8.0  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   8.0  
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||...    24   8.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   8.0  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 30/74 (40%), Positives = 42/74 (56%)
 Frame = +2

Query: 32  MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLXXXXX 211
           MA ++ G  +A  +  +LR+Q++ ++S    F   L I+QVGGREDSNVY+RMK      
Sbjct: 1   MALLLEGTSLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANE 60

Query: 212 XXXXXEHXRLPRDI 253
                EH   P DI
Sbjct: 61  AGISCEHVNFPEDI 74



 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 32/49 (65%)
 Frame = +1

Query: 256 EIELXAKITSLNESPSVHGIIVQMPLDSDHXIDAHRVTDAVSPDKXXDG 402
           E +L   I   NE P+VHGIIVQ+PL +   I+   +T+AV+P+K  DG
Sbjct: 76  EYDLLLAIKGFNEDPTVHGIIVQLPLPA--HINEQIITEAVAPEKDVDG 122


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 26/53 (49%), Positives = 38/53 (71%)
 Frame = +2

Query: 35  AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMK 193
           A I++G  +A  ++  + ++V  L++K   F+P LAIVQVG REDSNVY+RMK
Sbjct: 33  ANILNGKLLARKLQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRMK 85



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +1

Query: 265 LXAKITSLNESPSVHGIIVQMPLDSDHXIDAHRVTDAVSPDKXXDG 402
           L  ++  LN+  +VHG++VQ+PL     ++   VT++++P K  DG
Sbjct: 110 LLHELKKLNDDHTVHGVLVQLPLPK--HLNERTVTESITPPKDVDG 153


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 238 AXMFGGDTNFXSCLQLHPDVDVGVLAPAHLHDGKPGLEAR 119
           A  F   T+F S ++ +PD+ V  L    L +  PG++ +
Sbjct: 756 ALSFNHYTHFTSPIRRYPDIIVHRLLERSLKNTSPGIDKK 795


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 241 TKGHHEIELXAKITSLNESPSVHGIIVQMPLDSDHXI 351
           +K H + ++  +   L    SVH +I ++P   DH +
Sbjct: 69  SKIHEDQQVSFESVDLTSYESVHSMIERLPFCPDHVV 105


>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 56  EVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMK 193
           E+  S++ D+RQ++ +L  + S  E    I +   RE     IRM+
Sbjct: 31  EIESSLK-DVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQ 75


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 3    RPTRQFSGLRWHKLYLGLK 59
            RPTR+   + W KL  GL+
Sbjct: 985  RPTRRLKQMHWEKLNSGLE 1003


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,046
Number of Sequences: 5004
Number of extensions: 23608
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)