Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20314
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108...    43   8e-05
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960...    42   1e-04
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286...    40   8e-04
04_01_0039 + 455760-457631                                             29   1.4  
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084           28   3.3  
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888...    28   3.3  
01_01_1126 + 8925685-8925745,8926178-8926343,8927135-8927585,892...    27   5.8  

>02_01_0156 -
           1086750-1086920,1087680-1087847,1087935-1088171,
           1088763-1089073,1089343-1089571
          Length = 371

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 22/57 (38%), Positives = 33/57 (57%)
 Frame = +1

Query: 238 LTKGHHEIELXAKITSLNESPSVHGIIVQMPLDSDHXIDAHRVTDAVSPDKXXDGLN 408
           L +   E E+   I + N  PSVHGI+VQ+PL   H ++   + +AVS +K  DG +
Sbjct: 147 LPEDSSEDEVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKDVDGFH 201



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +2

Query: 35  AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLXXXXXX 214
           A+II G  VA  I  ++  ++ +++    G  P LA++ VG R+DS  Y+R K       
Sbjct: 80  AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138

Query: 215 XXXXEHXRLPRD 250
                   LP D
Sbjct: 139 GIKSYEVNLPED 150


>09_02_0466 +
           9599389-9599662,9600324-9600643,9600950-9601186,
           9601278-9601445,9601778-9601966
          Length = 395

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +1

Query: 277 ITSLNESPSVHGIIVQMPLDSDHXIDAHRVTDAVSPDKXXDGLN 408
           ++  NE PSVHGI+VQ+PL     +D  R+  A+S +K  DG +
Sbjct: 178 VSRFNEDPSVHGILVQLPL--PQHMDEERILSAISLEKDVDGFH 219


>05_01_0365 +
           2865496-2865588,2865673-2865856,2866791-2866948,
           2867035-2867247,2867330-2867560
          Length = 292

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = +1

Query: 256 EIELXAKITSLNESPSVHGIIVQMPLDSDHXIDAHRVTDAVSPDKXXDGLN 408
           E  L A++  LN  P+VHGI+VQ+PL     I+  ++ + +S +K  DG +
Sbjct: 75  EAALVAEVHRLNADPAVHGILVQLPLPK--HINEEKILNEISLEKDVDGFH 123


>04_01_0039 + 455760-457631
          Length = 623

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 277 ITSLNESPSVHGIIVQMPLDSDHXIDAHRVTDAVS 381
           ++ LNE P+++G +V +  DSD  ++   + DAV+
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVT 502


>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
          Length = 380

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 127 EARPF*TQPRHLLTQVIFYRS 65
           EAR F  QP+H LT ++ +RS
Sbjct: 338 EARSFEPQPKHRLTNLVIFRS 358


>06_01_1084 +
           8883301-8883515,8883736-8884063,8884764-8885022,
           8885581-8885681
          Length = 300

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 71  IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 160
           I+NDL Q++T  R+ S+W G   + A   VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191


>01_01_1126 +
           8925685-8925745,8926178-8926343,8927135-8927585,
           8927832-8927900,8928067-8928110,8928211-8928355
          Length = 311

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 154 HLHDGKPGLEARP 116
           HLHDG+PGL  +P
Sbjct: 100 HLHDGEPGLAKKP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,353
Number of Sequences: 37544
Number of extensions: 169291
Number of successful extensions: 361
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)