Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20314
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)            49   1e-06
SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)      34   0.040
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             28   2.6  
SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)           28   2.6  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)                      28   3.4  
SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     27   6.0  
SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)                       27   7.9  
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  27   7.9  

>SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)
          Length = 101

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 21/51 (41%), Positives = 35/51 (68%)
 Frame = +1

Query: 256 EIELXAKITSLNESPSVHGIIVQMPLDSDHXIDAHRVTDAVSPDKXXDGLN 408
           ++++   +  LN+  ++HGIIVQ+P DS++ ID    T+AV P+K  DGL+
Sbjct: 19  DMQVLKAVDELNKDSAIHGIIVQLPPDSENPIDPGICTNAVIPEKDVDGLH 69


>SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)
          Length = 316

 Score = 34.3 bits (75), Expect = 0.040
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -1

Query: 154 HLHDGKPGLEARPF*TQPRHLLTQVIFYRSCNFNPRYNLCHLSPENCLV 8
           HLH   P L  RPF T+ R + +Q +F R    + RY  C L   +CL+
Sbjct: 18  HLH---PPLFTRPFFTRIRTIYSQPVFIRRTLMDNRYRSCLLKGFSCLI 63


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 270 SKNHESERISFRSRHHCSNAP 332
           +K+++S +I FR R HC N P
Sbjct: 63  TKSYQSVQIQFRKRFHCRNFP 83


>SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)
          Length = 221

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 SKNHESERISFRSRHHCSNAP 332
           +K+++S  I FR R HC N P
Sbjct: 18  TKSYQSAHIQFRKRFHCRNFP 38


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 83  LRQQVTRLRSKWSGFEPRLAIVQVGGREDS 172
           +RQ V  + SK+ G  PR AI Q+GG  D+
Sbjct: 597 VRQPVNDVTSKYPG-SPRNAIAQIGGSRDA 625


>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
          Length = 842

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 29  KMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQ 151
           K A + +G  +AG I++ + +QVTR +   +GF   L + Q
Sbjct: 2   KKAAVAAGASIAGHIKHAIAEQVTRAK---TGFPRSLTLAQ 39


>SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 127 EARPF*TQPRHLLTQV---IFYRSCNFNPRYNLCHL 29
           +ARP    P  L T+    + Y +C+ +P +NLC L
Sbjct: 123 DARPLLLHPNKLFTKRRGRVSYYNCSTSPSFNLCEL 158


>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 378  DSISDSMSVDRVVRIKGHLNNDAVNGRRFVQTRDFCXQLYFMMSLGKRIC 229
            DSISD  SV      +G + + +        ++DFC +    +S G  IC
Sbjct: 1191 DSISDPESVLEARDFQGKVADTSAKSLFSDSSKDFCAEADLNLSSGSSIC 1240


>SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)
          Length = 569

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 RRTYXL---TKGHHEIELXAKITSLNESPSVHGIIVQMPLDSD 342
           RR Y L   +KG H++     + +   SP++  I+V+  L SD
Sbjct: 137 RRNYNLLFSSKGCHKVFTEPPLVAFRRSPNLRDILVKAKLPSD 179


>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 785

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 223 RRTYXL---TKGHHEIELXAKITSLNESPSVHGIIVQMPLDSDH 345
           RR Y L   +K  H++     + +   SP++  I+V+  L SDH
Sbjct: 591 RRNYNLLLSSKRCHKVFTEPPLVAFRRSPNLRDILVKAKLPSDH 634


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,041,613
Number of Sequences: 59808
Number of extensions: 184183
Number of successful extensions: 386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)