Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20312
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.3  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   6.3  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 364 LDEN*NETRLVKGFHLQMKIRTINSSSDLEWKYRL*QEISVRHHS 230
           +DE+ N++ +  G        + ++S DL+  Y+  Q    R +S
Sbjct: 48  MDEDKNDSGVTSGSDFHSSSPSSDTSQDLQHSYQSPQTQPARFYS 92


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 240  ATIQMHCDWTVEP 202
            +T  MH DWT +P
Sbjct: 1027 STEHMHPDWTTKP 1039


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 394 TQTDFSRASNTIDKRNLR 447
           + TDFS  S TID R ++
Sbjct: 44  SNTDFSFGSKTIDFRKIQ 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,270
Number of Sequences: 336
Number of extensions: 2806
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)